Factsheet for Os11t0168200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0167900-01	Rice	plastid	98.2	98.2
Zm00001d028622_P001	Maize	cytosol	94.6	94.6
Zm00001d004841_P002	Maize	cytosol	94.6	94.6
Zm00001d004839_P005	Maize	cytosol	94.6	94.6
Zm00001d003680_P003	Maize	cytosol	94.6	94.6
TraesCS4D01G109200.1	Wheat	cytosol, golgi, unclear	93.57	93.57
TraesCS4B01G111500.1	Wheat	cytosol	93.57	93.57
KXG27825	Sorghum	cytosol	93.32	93.32
TraesCS4A01G208000.1	Wheat	golgi, unclear	93.06	93.06
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	94.6	92.0
GSMUA_Achr7P03150_001	Banana	plasma membrane	88.69	88.69
HORVU4Hr1G019980.1	Barley	cytosol	93.57	88.56
GSMUA_Achr5P01070_001	Banana	cytosol	88.17	88.17
GSMUA_Achr11P...	Banana	cytosol, plastid	88.17	88.17
GSMUA_Achr5P01330_001	Banana	cytosol	87.15	87.15
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	85.86	85.86
VIT_18s0072g00340.t01	Wine grape	cytosol	87.4	85.64
KRH36391	Soybean	endoplasmic reticulum	85.09	85.09
KRG91678	Soybean	cytosol	85.09	85.09
KRH35119	Soybean	nucleus	84.83	84.83
AT1G43170.1	Thale cress	cytosol	84.83	84.83
AT1G61580.1	Thale cress	cytosol	84.58	84.36
VIT_12s0035g01020.t01	Wine grape	cytosol	81.49	84.31
Bra031423.1-P	Field mustard	cytosol	83.55	83.55
Bra038589.1-P	Field mustard	cytosol	83.55	83.55
Bra024985.1-P	Field mustard	cytosol	73.78	83.19
Bra024986.1-P	Field mustard	cytosol	83.29	82.86
CDY15023	Canola	cytosol	22.36	82.86
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	83.03	82.61
CDY68012	Canola	cytosol	75.84	81.94
CDY72003	Canola	cytosol	65.81	81.79
CDY33490	Canola	cytosol	65.81	81.79
CDY52305	Canola	cytosol	75.32	81.62
CDX77707	Canola	cytosol	75.32	81.62
CDY02391	Canola	extracellular	75.06	81.34
CDY33488	Canola	extracellular	75.06	81.34
CDY03838	Canola	cytosol, mitochondrion	43.44	81.25
CDY26350	Canola	cytosol	43.44	81.25
GSMUA_AchrUn_...	Banana	cytosol	88.43	80.94
Bra027986.1-P	Field mustard	cytosol	73.78	80.85
CDY12965	Canola	cytosol	74.55	80.78
CDY15022	Canola	cytosol	43.19	80.77
CDY03839	Canola	cytosol	20.82	78.64
CDY26351	Canola	cytosol	20.82	78.64
KRH27524	Soybean	endoplasmic reticulum, nucleus	85.6	76.91
Bra027830.1-P	Field mustard	cytosol	42.67	76.15
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	84.83	74.49
CDY45154	Canola	cytosol	11.57	68.18
VIT_07s0031g02050.t01	Wine grape	cytosol	19.79	55.0
PGSC0003DMT400093371	Potato	cytosol	9.51	44.58
GSMUA_Achr6P19610_001	Banana	plastid	8.48	42.31
Bra000894.1-P	Field mustard	cytosol	37.28	14.51

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	EntrezGene:4349878	ProteinID:AAX92996.1
ProteinID:AAX96477.1	ProteinID:ABA91585.1	EMBL:AK073392	EMBL:AK101469	ProteinID:BAF27689.1	ProteinID:BAT12841.1
ProteinID:DAA01152.1	ProteinID:EAZ17565.1	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	EMBL:JX972165
EnsemblPlantsGene:Os11g0168200	EnsemblPlants:Os11t0168200-01	PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6
UniProt:Q53JG0	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI0000508A5B
RefSeq:XP_015617260.1	SEG:seg	:	:	:	:

Description

RIBOSOMAL PROTEIN L3BRibosomal large subunit protein L3B, Regulation of leaf morphology and plant architecture (Os11t0168200-01);60S ribosomal protein L3. (Os11t0168200-02)

Coordinates

chr11:+:3294155..3297022

Molecular Weight (calculated)

44493.6 Da

IEP (calculated)

10.754

GRAVY (calculated)

-0.616

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RSSRHRGKVK SFPKDDVNKP CHLTSFVGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPPIVVVGLV AYVKTPRGLR
101: SLNSVWAQHL SEEVRRRFYK NWCKSKKKAF TKYALKYDSD AGKKEIQMQL EKMKKYASVV RVIVHTQIRK MKGLKQKKAH LMEIQINGGT IADKVDYGYK
201: FFEKEIPVDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYKIGK SGQESHAACT
301: EFDRTEKDIT PMGGFPHYGV VKGDYLMIKG CCVGPKKRVV TLRQSLLKQT SRLALEEIKL KFIDTSSKFG HGRFQTTDEK QRFFGKLKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.