Factsheet for GSMUA_Achr5P01330_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, plastid	90.75	90.75
GSMUA_Achr7P03150_001	Banana	plasma membrane	90.23	90.23
GSMUA_Achr5P01070_001	Banana	cytosol	88.69	88.69
Os12t0167900-01	Rice	plastid	87.15	87.15
EES12864	Sorghum	cytosol, plastid	87.15	87.15
Os11t0168200-01	Rice	nucleus	87.15	87.15
Zm00001d003680_P003	Maize	cytosol	86.89	86.89
Zm00001d004839_P005	Maize	cytosol	86.89	86.89
Zm00001d004841_P002	Maize	cytosol	86.89	86.89
KXG27825	Sorghum	cytosol	86.63	86.63
Zm00001d028622_P001	Maize	cytosol	86.63	86.63
TraesCS5B01G118400.1	Wheat	cytosol, unclear	85.86	85.86
TraesCS4A01G208000.1	Wheat	golgi, unclear	85.09	85.09
TraesCS4B01G111500.1	Wheat	cytosol	85.09	85.09
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	85.09	85.09
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	86.89	84.5
Zm00001d002463_P001	Maize	cytosol	54.76	84.19
GSMUA_AchrUn_...	Banana	cytosol	91.0	83.29
HORVU5Hr1G036630.1	Barley	plasma membrane	85.86	81.66
HORVU4Hr1G019980.1	Barley	cytosol	85.09	80.54
GSMUA_Achr6P19610_001	Banana	plastid	8.48	42.31

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr5G01330_001	EnsemblPlants:GSMUA_Achr5P01330_001
EnsemblPlants:GSMUA_Achr5T01330_001	UniProt:M0SUR2	PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6
InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI0002969399	SEG:seg

Description

60S ribosomal protein L3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G01330_001]

Coordinates

chr5:+:767024..770208

Molecular Weight (calculated)

44342.3 Da

IEP (calculated)

10.748

GRAVY (calculated)

-0.632

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK SFPKDDPSKL PGLTAFVAYK SGMTHIVREV DKPGSKLHKK ETCEAVTIIE APPMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVKRRFYK NWSKSKKKAF VKYSKKYETE EGKKEIQAQL EKMKKYASVI RVLAHTQIRK LKGLKQKKAH LMEIQVNGGD IAAKVDYAYK
201: FFEKQIPVDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKIYKLGK AGEESHLATT
301: EFDRTEKGIT PMGGFPHYGV VKDDYLLIKG CCVGPKKRVV TLRQSLLKQT SRVAMEEIKL KFVDTSSKFG HGRFQTTEEK EKFYGKLKA

Best Arabidopsis Sequence Match ( AT1G61580.1 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK AFPKDDPTKP CRLTSFLGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPPMVVVGVV GYVKTPRGLR
101: SLCTVWAQHL SEELRRRFYK NWAKSKKKAF TRYSKKHETE EGKKDIQSQL EKMKKYCSVI RVLAHTQIRK MKGLKQKKAH LNEIQINGGD IAKKVDYACS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYRVGK VGQETHSAMT
301: EYDRTEKDIT PMGGFPHYGI VKEDYLMIKG CCVGPKKRVV TLRQTLLKQT SRLAMEEIKL KFIDAASNGG HGRFQTSQEK AKFYGRTIKA

Arabidopsis Description

ARP260S ribosomal protein L3-2 [Source:UniProtKB/Swiss-Prot;Acc:P22738]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.