CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004841_P002	Maize	cytosol	97.43	97.43
Zm00001d004839_P005	Maize	cytosol	97.43	97.43
Zm00001d003680_P003	Maize	cytosol	97.43	97.43
EES12864	Sorghum	cytosol, plastid	97.17	97.17
Zm00001d028622_P001	Maize	cytosol	97.17	97.17
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	97.43	94.75
TraesCS4D01G109200.1	Wheat	cytosol, golgi, unclear	93.83	93.83
TraesCS4B01G111500.1	Wheat	cytosol	93.83	93.83
TraesCS4A01G208000.1	Wheat	golgi, unclear	93.32	93.32
Os11t0168200-01	Rice	nucleus	93.32	93.32
HORVU4Hr1G019980.1	Barley	cytosol	93.83	88.81
GSMUA_Achr11P...	Banana	cytosol, plastid	88.43	88.43
GSMUA_Achr5P01070_001	Banana	cytosol	88.43	88.43
GSMUA_Achr7P03150_001	Banana	plasma membrane	88.43	88.43
GSMUA_Achr5P01330_001	Banana	cytosol	86.63	86.63
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	86.38	86.38
VIT_18s0072g00340.t01	Wine grape	cytosol	87.66	85.89
KRG91678	Soybean	cytosol	85.86	85.86
KRH35119	Soybean	nucleus	85.6	85.6
KRH36391	Soybean	endoplasmic reticulum	84.58	84.58
CDY26350	Canola	cytosol	44.99	84.13
AT1G61580.1	Thale cress	cytosol	84.32	84.1
Bra038589.1-P	Field mustard	cytosol	84.06	84.06
Bra031423.1-P	Field mustard	cytosol	84.06	84.06
AT1G43170.1	Thale cress	cytosol	83.8	83.8
CDY15022	Canola	cytosol	44.73	83.65
CDY03838	Canola	cytosol, mitochondrion	44.47	83.17
CDY68012	Canola	cytosol	76.35	82.5
VIT_12s0035g01020.t01	Wine grape	cytosol	79.69	82.45
Bra024985.1-P	Field mustard	cytosol	72.75	82.03
Bra024986.1-P	Field mustard	cytosol	82.01	81.59
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	81.75	81.33
CDY15023	Canola	cytosol	21.85	80.95
GSMUA_AchrUn_...	Banana	cytosol	88.17	80.71
CDY33490	Canola	cytosol	64.78	80.51
CDY72003	Canola	cytosol	64.78	80.51
CDY33488	Canola	extracellular	74.29	80.5
CDY52305	Canola	cytosol	74.04	80.22
CDX77707	Canola	cytosol	74.04	80.22
CDY02391	Canola	extracellular	73.78	79.94
Bra027986.1-P	Field mustard	cytosol	72.49	79.44
CDY12965	Canola	cytosol	73.26	79.39
CDY03839	Canola	cytosol	20.31	76.7
KRH27524	Soybean	endoplasmic reticulum, nucleus	85.09	76.44
CDY26351	Canola	cytosol	20.05	75.73
Bra027830.1-P	Field mustard	cytosol	42.42	75.69
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	84.83	74.49
CDY45154	Canola	cytosol	11.83	69.7
VIT_07s0031g02050.t01	Wine grape	cytosol	19.28	53.57
GSMUA_Achr6P19610_001	Banana	plastid	9.0	44.87
Bra000894.1-P	Field mustard	cytosol	39.07	15.22

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	UniProt:A0A1B6PQ87	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	EnsemblPlants:KXG27825	ProteinID:KXG27825	ProteinID:KXG27825.1	PFAM:PF00297
ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	EnsemblPlantsGene:SORBI_3005G050500
SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI0002207225	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:4817537..4820991

Molecular Weight (calculated)

44504.5 Da

IEP (calculated)

10.746

GRAVY (calculated)

-0.667

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RSSRHRGKVK SFPRDDPKKA CHLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPPLVIVGLV AYVKTPRGLR
101: TLNTVWAQHL SEEVRRRFYK NWCKSKKKAF SKYALKYDND AGKKEIQLQL EKMKKYASVV RVIAHTQIKK MKGLKQKKAH LMEIQVNGGT IADKVDYGYK
201: FFEKEVPVDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYKIGK AGQETHDAST
301: EFDRTEKDIT PMGGFPHYGI VKGDYLMIKG CCVGPKKRVV TLRQSLLKQT SRLALEEIKL KFIDTSSKFG HGRFQTTEEK QRHYGKVKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.