Factsheet for Bra027986.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52305	Canola	cytosol	99.15	98.05
Bra024986.1-P	Field mustard	cytosol	98.59	89.51
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	98.03	89.0
Bra024985.1-P	Field mustard	cytosol	85.92	88.41
AT1G43170.1	Thale cress	cytosol	90.7	82.78
Bra031423.1-P	Field mustard	cytosol	83.38	76.09
Bra038589.1-P	Field mustard	cytosol	83.38	76.09
Bra027830.1-P	Field mustard	cytosol	46.2	75.23
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	80.85	73.78
TraesCS4B01G111500.1	Wheat	cytosol	80.85	73.78
Os11t0168200-01	Rice	nucleus	80.85	73.78
TraesCS5B01G118400.1	Wheat	cytosol, unclear	80.56	73.52
Os12t0167900-01	Rice	plastid	80.56	73.52
TraesCS4A01G208000.1	Wheat	golgi, unclear	80.56	73.52
Zm00001d004841_P002	Maize	cytosol	80.28	73.26
Zm00001d003680_P003	Maize	cytosol	80.28	73.26
Zm00001d004839_P005	Maize	cytosol	80.28	73.26
Zm00001d028622_P001	Maize	cytosol	80.28	73.26
EES12864	Sorghum	cytosol, plastid	80.0	73.01
KXG27825	Sorghum	cytosol	79.44	72.49
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	80.28	71.25
HORVU4Hr1G019980.1	Barley	cytosol	80.85	69.83
HORVU5Hr1G036630.1	Barley	plasma membrane	80.0	69.44
Zm00001d002463_P001	Maize	cytosol	44.51	62.45
Bra000894.1-P	Field mustard	cytosol	36.06	12.81

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	EnsemblPlantsGene:Bra027986	EnsemblPlants:Bra027986.1
EnsemblPlants:Bra027986.1-P	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:M4EGS2	PFAM:PF00297	PANTHER:PTHR11363
PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI00025422A4	SEG:seg

Description

AT1G43170 (E=9e-117) ARP1, RPL3A | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome

Coordinates

chrA09:+:10331258..10332971

Molecular Weight (calculated)

40728.8 Da

IEP (calculated)

10.735

GRAVY (calculated)

-0.679

Length

355 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYETE EGKKSIQSQL EKMKKYGTVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIDA VFQKDEMIDV MWHPARVSYT VARAGQNGYH HRTELNKKIY RLGKVGQETH TAMTEYDRTE KDVTPMGGFA HYGVVKDDYL MIKGCCMGPK
301: KRVVTLRQSL LTQTSRLAME QINLKFIGTS SKMGHGKFQT TQEKNKFYGR ASAKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.