Factsheet for AT1G43170.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	92.8	92.33
CDY02391	Canola	extracellular	84.83	91.92
Bra024986.1-P	Field mustard	cytosol	92.03	91.56
CDX77707	Canola	cytosol	84.32	91.36
CDY52305	Canola	cytosol	84.32	91.36
CDY33488	Canola	extracellular	83.8	90.81
Bra024985.1-P	Field mustard	cytosol	80.46	90.72
Bra027986.1-P	Field mustard	cytosol	82.78	90.7
CDY12965	Canola	cytosol	83.29	90.25
CDY72003	Canola	cytosol	72.49	90.1
CDY33490	Canola	cytosol	72.49	90.1
AT1G61580.1	Thale cress	cytosol	85.86	85.64
Os11t0168200-01	Rice	nucleus	84.83	84.83
Os12t0167900-01	Rice	plastid	84.58	84.58
TraesCS4B01G111500.1	Wheat	cytosol	84.58	84.58
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	84.58	84.58
TraesCS5B01G118400.1	Wheat	cytosol, unclear	84.58	84.58
TraesCS4A01G208000.1	Wheat	golgi, unclear	84.32	84.32
EES12864	Sorghum	cytosol, plastid	84.06	84.06
Zm00001d028622_P001	Maize	cytosol	83.8	83.8
Zm00001d004841_P002	Maize	cytosol	83.8	83.8
Zm00001d004839_P005	Maize	cytosol	83.8	83.8
Zm00001d003680_P003	Maize	cytosol	83.8	83.8
KXG27825	Sorghum	cytosol	83.8	83.8
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	83.8	81.5
HORVU5Hr1G036630.1	Barley	plasma membrane	84.32	80.2
HORVU4Hr1G019980.1	Barley	cytosol	84.58	80.05
Zm00001d002463_P001	Maize	cytosol	51.41	79.05

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	EntrezGene:840916	UniProt:A0A178WDT7
ProteinID:AAC36018.1	ProteinID:AEE31951.1	ProteinID:AEE31952.1	ProteinID:AEE31953.1	ProteinID:AEE31955.1	ProteinID:AEE31956.1
ProteinID:AEE31957.1	ProteinID:AEE31958.1	ProteinID:AEE31959.1	EMBL:AF327421	EMBL:AF361101	EMBL:AF361809
Symbol:ARP1	ArrayExpress:AT1G43170	EnsemblPlantsGene:AT1G43170	RefSeq:AT1G43170	TAIR:AT1G43170	RefSeq:AT1G43170-TAIR-G
EnsemblPlants:AT1G43170.1	TAIR:AT1G43170.1	EMBL:AY039544	EMBL:AY052743	EMBL:AY057487	Unigene:At.24630
GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005829
GO:GO:0005840	GO:GO:0005886	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009506	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625
GO:GO:0022626	GO:GO:0030312	GO:GO:0030529	GO:GO:0042788	EMBL:M32654	RefSeq:NP_001031146.1
RefSeq:NP_001185148.1	RefSeq:NP_001185149.1	RefSeq:NP_001185150.1	RefSeq:NP_001185151.1	RefSeq:NP_001185152.1	RefSeq:NP_175009.1
RefSeq:NP_973966.1	ProteinID:OAP16577.1	UniProt:P17094	PFAM:PF00297	PO:PO:0000005	PO:PO:0000013
PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0005052	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	Symbol:RP1	InterPro:Ribosomal_L3
InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI0000163020	EMBL:Z25950	SEG:seg

Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]

Coordinates

chr1:+:16266553..16268945

Molecular Weight (calculated)

44561.7 Da

IEP (calculated)

10.828

GRAVY (calculated)

-0.581

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.