CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72003	Canola	cytosol	86.91	99.68
CDY33490	Canola	cytosol	86.91	99.68
CDX77707	Canola	cytosol	99.44	99.44
CDY52305	Canola	cytosol	99.44	99.44
CDY02391	Canola	extracellular	98.33	98.33
CDY12965	Canola	cytosol	96.1	96.1
AT1G43170.1	Thale cress	cytosol	90.81	83.8
CDY15023	Canola	cytosol	24.23	82.86
CDY68012	Canola	cytosol	82.73	82.5
CDY15022	Canola	cytosol	45.96	79.33
CDY26350	Canola	cytosol	45.96	79.33
CDY03838	Canola	cytosol, mitochondrion	45.96	79.33
CDY26351	Canola	cytosol	22.28	77.67
CDY03839	Canola	cytosol	22.28	77.67
TraesCS4B01G111500.1	Wheat	cytosol	81.62	75.32
Zm00001d028622_P001	Maize	cytosol	81.34	75.06
Zm00001d004841_P002	Maize	cytosol	81.34	75.06
Zm00001d004839_P005	Maize	cytosol	81.34	75.06
Zm00001d003680_P003	Maize	cytosol	81.34	75.06
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	81.34	75.06
TraesCS4A01G208000.1	Wheat	golgi, unclear	81.34	75.06
Os12t0167900-01	Rice	plastid	81.34	75.06
Os11t0168200-01	Rice	nucleus	81.34	75.06
TraesCS5B01G118400.1	Wheat	cytosol, unclear	81.06	74.81
EES12864	Sorghum	cytosol, plastid	81.06	74.81
KXG27825	Sorghum	cytosol	80.5	74.29
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	81.34	73.0
HORVU4Hr1G019980.1	Barley	cytosol	81.62	71.29
HORVU5Hr1G036630.1	Barley	plasma membrane	81.06	71.15
CDY45154	Canola	cytosol	12.26	66.67
Zm00001d002463_P001	Maize	cytosol	45.96	65.22

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	GO:A0A078H9F5	UniProt:A0A078H9F5	EnsemblPlants:CDY33488
ProteinID:CDY33488	ProteinID:CDY33488.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00054735001	PFAM:PF00297
PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI0004EDFDBD
SEG:seg	:	:	:	:	:

Description

BnaA06g35850DBnaA06g35850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9F5]

Coordinates

chrLK032315:+:253014..255116

Molecular Weight (calculated)

41043.1 Da

IEP (calculated)

10.673

GRAVY (calculated)

-0.658

Length

359 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQSKP CKFTAFMGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYETE EGKKSIQSQL EKMKKYGTVI RVLAHTQIRK MKGLKQKKAH MMEIQVNGGT IAQKVDFAYS
201: FFEKQIPIDA VFQKDEMIDV ACIGAWHPAR VSYTVARAGQ NGYHHRTELN KKIYRLGKVG QETHTAMTEY DRTEKDVTPM GGFAHYGVVK DDYLMIKGCC
301: MGPKKRVVTL RQSLLTQTSR LAMEQINLKF IDTSSKMGHG KFQTTQEKNK FYGRASAKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.