CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26351	Canola	cytosol	99.03	99.03
CDY15023	Canola	cytosol	88.35	86.67
CDY68012	Canola	cytosol	88.35	25.28
AT1G61580.1	Thale cress	cytosol	86.41	22.82
PGSC0003DMT400064116	Potato	cytosol	85.44	22.62
CDX77707	Canola	cytosol	78.64	22.56
CDY02391	Canola	extracellular	78.64	22.56
CDY12965	Canola	cytosol	78.64	22.56
CDY52305	Canola	cytosol	78.64	22.56
CDY33488	Canola	extracellular	77.67	22.28
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	78.64	20.82
Os11t0168200-01	Rice	nucleus	78.64	20.82
Zm00001d003680_P003	Maize	cytosol	77.67	20.57
TraesCS5B01G118400.1	Wheat	cytosol, unclear	77.67	20.57
Zm00001d004839_P005	Maize	cytosol	77.67	20.57
Zm00001d004841_P002	Maize	cytosol	77.67	20.57
Zm00001d028622_P001	Maize	cytosol	76.7	20.31
Os12t0167900-01	Rice	plastid	76.7	20.31
EES12864	Sorghum	cytosol, plastid	76.7	20.31
KXG27825	Sorghum	cytosol	76.7	20.31
TraesCS4B01G111500.1	Wheat	cytosol	75.73	20.05
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	77.67	20.0
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	85.44	19.86
TraesCS4A01G208000.1	Wheat	golgi, unclear	74.76	19.79
HORVU5Hr1G036630.1	Barley	plasma membrane	77.67	19.56
HORVU4Hr1G019980.1	Barley	cytosol	75.73	18.98
VIT_12s0035g01020.t01	Wine grape	cytosol	64.08	17.55
CDY72003	Canola	cytosol	39.81	13.1
CDY33490	Canola	cytosol	39.81	13.1
CDY45154	Canola	cytosol	5.83	9.09
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	11.65	5.11
Zm00001d002463_P001	Maize	cytosol	5.83	2.37
CDY26350	Canola	cytosol	0.97	0.48
CDY15022	Canola	cytosol	0.97	0.48
CDY03838	Canola	cytosol, mitochondrion	0.97	0.48

Protein Annotations

MapMan:35.1	Gene3D:4.10.960.10	GO:A0A078ET87	EnsemblPlants:CDY03839	ProteinID:CDY03839	ProteinID:CDY03839.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00117297001	PFAM:PF00297	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6
InterPro:Ribosomal_L3	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI0004EED080	SEG:seg	:

Description

BnaC01g29560D

Coordinates

chrLK031946:-:1079805..1081361

Molecular Weight (calculated)

11560.2 Da

IEP (calculated)

10.430

GRAVY (calculated)

-0.599

Length

103 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRQRGKVK AFPKDDPTKP CRLTSFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTVIE TPPMVVVGVV GSEEEVLQEL
101: GQV

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.