Factsheet for PGSC0003DMT400064116

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076546	Potato	cytosol	92.8	92.8
VIT_12s0035g01020.t01	Wine grape	cytosol	87.15	90.16
CDY15023	Canola	cytosol	24.16	89.52
Bra038589.1-P	Field mustard	cytosol	89.46	89.46
Bra031423.1-P	Field mustard	cytosol	88.69	88.69
CDY26350	Canola	cytosol	47.3	88.46
CDY15022	Canola	cytosol	47.04	87.98
AT1G61580.1	Thale cress	cytosol	88.17	87.95
CDY03838	Canola	cytosol, mitochondrion	46.79	87.5
CDY68012	Canola	cytosol	80.98	87.5
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	98.97	86.91
CDY03839	Canola	cytosol	22.62	85.44
CDY26351	Canola	cytosol	22.36	84.47
Bra027830.1-P	Field mustard	cytosol	44.47	79.36
PGSC0003DMT400093371	Potato	cytosol	9.51	44.58
GSMUA_Achr6P19610_001	Banana	plastid	8.74	43.59
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	11.31	18.72
Bra000894.1-P	Field mustard	cytosol	38.05	14.81

Protein Annotations

EntrezGene:102590107	MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	UniProt:M1CBS3	PFAM:PF00297	EnsemblPlantsGene:PGSC0003DMG400024915	PGSC:PGSC0003DMG400024915
EnsemblPlants:PGSC0003DMT400064116	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS
SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI000296D07F	RefSeq:XP_006349325.1	RefSeq:XP_006349326.1	SEG:seg

Description

Ribosomal protein L3 [Source:PGSC_GENE;Acc:PGSC0003DMG400024915]

Coordinates

chr1:-:80201416..80205004

Molecular Weight (calculated)

44429.6 Da

IEP (calculated)

10.747

GRAVY (calculated)

-0.579

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RAARHRGKVK AFPKDDPTKP CRLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPPMIVVGVV GYVKTPRGLR
101: CLSTVWAQHL SEEIKRRFYK NWCMSKKKAF AKYSKKYETD EGKKDINAQL EKMKKYCSVI RVLAHTQIRK MKGLKQKKAH LMEIQVNGGD VAQKVDYAYG
201: FFEKQIPIDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSFTVARA GQNGYHHRTE MNKKVYRLGK AGQESHSAIT
301: EFDRTEKEIT PIGGFPHYGV VKEDFLLIKG CCVGPKKRVV TLRQSLLNQT SRVALEEIKL KFIDTSSKFG HGRFQTTQEK AKFYGRLKA

Best Arabidopsis Sequence Match ( AT1G61580.1 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK AFPKDDPTKP CRLTSFLGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPPMVVVGVV GYVKTPRGLR
101: SLCTVWAQHL SEELRRRFYK NWAKSKKKAF TRYSKKHETE EGKKDIQSQL EKMKKYCSVI RVLAHTQIRK MKGLKQKKAH LNEIQINGGD IAKKVDYACS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYRVGK VGQETHSAMT
301: EYDRTEKDIT PMGGFPHYGI VKEDYLMIKG CCVGPKKRVV TLRQTLLKQT SRLAMEEIKL KFIDAASNGG HGRFQTSQEK AKFYGRTIKA

Arabidopsis Description

ARP260S ribosomal protein L3-2 [Source:UniProtKB/Swiss-Prot;Acc:P22738]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.