Factsheet for Bra038589.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26350	Canola	cytosol	53.21	99.52
Bra031423.1-P	Field mustard	cytosol	97.94	97.94
AT1G61580.1	Thale cress	cytosol	92.8	92.56
CDY26351	Canola	cytosol	23.91	90.29
PGSC0003DMT400064116	Potato	cytosol	89.46	89.46
Bra027830.1-P	Field mustard	cytosol	49.87	88.99
VIT_12s0035g01020.t01	Wine grape	cytosol	84.32	87.23
Bra024985.1-P	Field mustard	cytosol	75.32	84.93
Bra024986.1-P	Field mustard	cytosol	85.35	84.91
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	85.35	84.91
Zm00001d028622_P001	Maize	cytosol	84.32	84.32
Zm00001d003680_P003	Maize	cytosol	84.32	84.32
Zm00001d004839_P005	Maize	cytosol	84.32	84.32
Zm00001d004841_P002	Maize	cytosol	84.32	84.32
KXG27825	Sorghum	cytosol	84.06	84.06
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	84.06	84.06
EES12864	Sorghum	cytosol, plastid	83.8	83.8
TraesCS5B01G118400.1	Wheat	cytosol, unclear	83.8	83.8
Os11t0168200-01	Rice	nucleus	83.55	83.55
TraesCS4B01G111500.1	Wheat	cytosol	83.55	83.55
Bra027986.1-P	Field mustard	cytosol	76.09	83.38
TraesCS4A01G208000.1	Wheat	golgi, unclear	83.29	83.29
Os12t0167900-01	Rice	plastid	82.78	82.78
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	84.32	82.0
Zm00001d002463_P001	Maize	cytosol	52.19	80.24
HORVU5Hr1G036630.1	Barley	plasma membrane	83.8	79.71
HORVU4Hr1G019980.1	Barley	cytosol	83.55	79.08
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	89.2	78.33
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	11.31	18.72
Bra000894.1-P	Field mustard	cytosol	40.87	15.92

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	EnsemblPlantsGene:Bra038589	EnsemblPlants:Bra038589.1
EnsemblPlants:Bra038589.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	UniProt:M4FBX3
PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS
SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI000253E7AE	SEG:seg	:	:

Description

AT1G61580 (E=2e-198) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome

Coordinates

chrScaffold000149:-:295770..297290

Molecular Weight (calculated)

44459.4 Da

IEP (calculated)

10.794

GRAVY (calculated)

-0.685

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRQRGKVK AFPKDDHTKP CRLTSFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTVIE TPPMVVVGVV GYVKTPRGLR
101: SLSTVWAQHL SEDVRRRFYK NWAKSKKKAF TKYSKKHETE EGKKDIQSQL DKMKKYCTVI RVLAHTQIRK MKGLKQKKAH LNEIQVNGGD VAKKVDYAYS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKIYRLGK VGQETHTAMT
301: EFDRTEKEIT PMGGFPHYGI VKEDYLLIKG CCVGPKKRVV TLRQTLLKQT SRVALEEIKL KFIDTSSTGG HGRFQTAEEK AKFYGRVKA

Best Arabidopsis Sequence Match ( AT1G61580.1 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK AFPKDDPTKP CRLTSFLGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPPMVVVGVV GYVKTPRGLR
101: SLCTVWAQHL SEELRRRFYK NWAKSKKKAF TRYSKKHETE EGKKDIQSQL EKMKKYCSVI RVLAHTQIRK MKGLKQKKAH LNEIQINGGD IAKKVDYACS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYRVGK VGQETHSAMT
301: EYDRTEKDIT PMGGFPHYGI VKEDYLMIKG CCVGPKKRVV TLRQTLLKQT SRLAMEEIKL KFIDAASNGG HGRFQTSQEK AKFYGRTIKA

Arabidopsis Description

ARP260S ribosomal protein L3-2 [Source:UniProtKB/Swiss-Prot;Acc:P22738]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.