Factsheet for Bra000894.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15022	Canola	cytosol	12.11	58.17
Bra027830.1-P	Field mustard	cytosol	11.91	54.59
Zm00001d002463_P001	Maize	cytosol	12.41	49.01
Bra031423.1-P	Field mustard	cytosol	15.92	40.87
Bra038589.1-P	Field mustard	cytosol	15.92	40.87
Bra024985.1-P	Field mustard	cytosol	13.91	40.29
VIT_12s0035g01020.t01	Wine grape	cytosol	14.81	39.36
KXG27825	Sorghum	cytosol	15.22	39.07
Zm00001d004841_P002	Maize	cytosol	15.12	38.82
Zm00001d004839_P005	Maize	cytosol	15.12	38.82
Zm00001d003680_P003	Maize	cytosol	15.12	38.82
Zm00001d028622_P001	Maize	cytosol	15.02	38.56
AT1G61580.1	Thale cress	cytosol	15.02	38.46
EES12864	Sorghum	cytosol, plastid	14.91	38.3
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	14.81	38.05
PGSC0003DMT400064116	Potato	cytosol	14.81	38.05
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	15.22	38.0
Bra024986.1-P	Field mustard	cytosol	14.81	37.85
Os12t0167900-01	Rice	plastid	14.71	37.79
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	14.71	37.6
TraesCS4A01G208000.1	Wheat	golgi, unclear	14.61	37.53
TraesCS4B01G111500.1	Wheat	cytosol	14.61	37.53
TraesCS5B01G118400.1	Wheat	cytosol, unclear	14.61	37.53
Os11t0168200-01	Rice	nucleus	14.51	37.28
Bra027986.1-P	Field mustard	cytosol	12.81	36.06
HORVU5Hr1G036630.1	Barley	plasma membrane	14.71	35.94
HORVU4Hr1G019980.1	Barley	cytosol	14.61	35.52
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	14.91	33.63
CDY15023	Canola	cytosol	1.8	17.14
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	2.8	11.91

Protein Annotations

Gene3D:2.40.30.10	MapMan:35.1	Gene3D:4.10.960.10	EnsemblPlantsGene:Bra000894	EnsemblPlants:Bra000894.1	EnsemblPlants:Bra000894.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:M4C9L5	PFAM:PF00297	PANTHER:PTHR11363
PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI000254060C	SEG:seg

Description

AT1G61580 (E=2e-061) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome

Coordinates

chrA03:+:13762854..13766881

Molecular Weight (calculated)

114838.0 Da

IEP (calculated)

9.856

GRAVY (calculated)

-0.794

Length

999 amino acids

Sequence
(BLAST)

001: MVMTVNVFKL DLSESDGDKE MTTTNKVAVQ SQGILAQIKS IKKKKKKRAY VKRNDSKDDD VDCRKRRHAD CDEGNTTHKP RKKRNMFAKI TIKHGVQLTV
101: RSARERLDED FKKLTGWILL SRNKDYFLLY RGKNFLSQEV SDALVAQEKF VRSFQEKEED ALDEENRHRE DFKTDVSKSE KTIETTLEEL EKIKIERQSL
201: ATATNNLEKQ SKSMCEKAIL EKELLQFTKT INALQKEAES TGMEAESSLV MLKNAASDVL QSDSKQESRT ESNALELETI EKALKKENII EEMKKEAEST
301: KLLTEEHHKK KEKNDKKLGH NRKPRVEKDP GISSYCPLKE KELVMALDPK SRAAAGSETP WTQTPVTDVT VVGAQRDYLT DVKSMKRTTN EKIYECNRVR
401: LLLYKILTHS NPKIPNGWIS AARVEEMNGK TAARIMLHGA VECCPFRQEL WAALARLDTY ENPRKTHRGL CKVACIGAWH PARVSYTVAR AGHKGYHHRS
501: EFNKKIYRLR KVGQETHTAM IVFDRTKKEI TLMGGFTHYG IVKDDYLLIK GCCVGPKKHV LTLRQTLLKQ ASRVVLEEIK LKFIDTCSTG GHSRFQTTEE
601: NLRKLLNQTL EKLIKEPTIW ITYAELEEAN GNTHMVGKIN DIGIKTLQRN GIVMDQENWI NKIETFEKEG SVVTCKAIGY PDHVYRSVAA AAAPAPIEKA
701: EDDEDDDKKR RKRKREIEVP VGVKNEMEIV ESDQRGEIKE LEAKDREMND IVESLKNEEK VLFHIINRLE KNLDKSIEKE RAMVVQIDAI GKEKMVKESE
801: LGRKKSDKSN RFNTGPLIRF SYSKPKFELE KTSLGIVMVM TVNVFKLDLS ESDGDKEMTT TNKVAVQSQG ILAQIKSIKK KKKKRAYVKR NDSKDDDVDC
901: RKRRHADCDE GNTTHKPRKK RNMFAKITIK HGVQLTVRSA RERLDEDFKK LTGWILLSRN KDYFLLYRGK NFLSQEVSDD DFKPKPISAE SSMKNEHVM

Best Arabidopsis Sequence Match ( AT1G43170.4 )
(BLAST)

001: MVVVGVVAYV KTPRGLRSLN TVWAQHLSEE VRRRFYKNWA KSKKKAFTGY AKQYDSEDGK KGIQAQLEKM KKYATVIRVL AHTQIRKMKG LKQKKAHMME
101: IQINGGTIAQ KVDFAYSFFE KQIPIEAVFQ KDEMIDIIGV TKGKGYEGVV TRWGVTRLPR KTHRGLRKVA CIGAWHPARV SYTVARAGQN GYHHRTELNK
201: KIYRLGKVGT EAHTAMTEYD RTEKDVTPMG GFPHYGIVKD DYLMIKGCCV GPKKRVVTLR QSLLTQTSRL ALEEIKLKFI DTASIFGHGR FQTSLEKMRF
301: YNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.