Factsheet for TraesCS5A01G112400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G129200.1	Wheat	cytosol, golgi	98.97	98.97
TraesCS5B01G118400.1	Wheat	cytosol, unclear	98.71	98.71
Os12t0167900-01	Rice	plastid	94.34	94.34
TraesCS4A01G208000.1	Wheat	golgi, unclear	93.57	93.57
HORVU5Hr1G036630.1	Barley	plasma membrane	97.17	92.42
GSMUA_Achr7P03150_001	Banana	plasma membrane	87.4	87.4
GSMUA_Achr5P01070_001	Banana	cytosol	87.15	87.15
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	86.89	86.89
GSMUA_Achr11P...	Banana	cytosol, plastid	86.63	86.63
VIT_18s0072g00340.t01	Wine grape	cytosol	87.92	86.15
KRG91678	Soybean	cytosol	85.6	85.6
KRH36391	Soybean	endoplasmic reticulum	85.35	85.35
KRH35119	Soybean	nucleus	85.35	85.35
GSMUA_Achr5P01330_001	Banana	cytosol	85.09	85.09
AT1G43170.1	Thale cress	cytosol	84.58	84.58
Bra038589.1-P	Field mustard	cytosol	84.06	84.06
Bra031423.1-P	Field mustard	cytosol	83.55	83.55
AT1G61580.1	Thale cress	cytosol	83.55	83.33
VIT_12s0035g01020.t01	Wine grape	cytosol	80.46	83.24
Bra024986.1-P	Field mustard	cytosol	83.29	82.86
CDY26350	Canola	cytosol	44.22	82.69
CDY03838	Canola	cytosol, mitochondrion	44.22	82.69
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	83.03	82.61
Bra024985.1-P	Field mustard	cytosol	73.01	82.32
CDY15022	Canola	cytosol	43.96	82.21
CDY68012	Canola	cytosol	75.84	81.94
CDY15023	Canola	cytosol	22.11	81.9
CDY52305	Canola	cytosol	75.32	81.62
CDX77707	Canola	cytosol	75.32	81.62
CDY33488	Canola	extracellular	75.06	81.34
CDY02391	Canola	extracellular	75.06	81.34
Bra027986.1-P	Field mustard	cytosol	73.78	80.85
CDY72003	Canola	cytosol	65.04	80.83
CDY33490	Canola	cytosol	65.04	80.83
CDY12965	Canola	cytosol	74.55	80.78
GSMUA_AchrUn_...	Banana	cytosol	86.89	79.53
CDY03839	Canola	cytosol	20.82	78.64
CDY26351	Canola	cytosol	20.82	78.64
KRH27524	Soybean	endoplasmic reticulum, nucleus	85.86	77.14
Bra027830.1-P	Field mustard	cytosol	42.93	76.61
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	84.06	73.81
CDY45154	Canola	cytosol	11.83	69.7
VIT_07s0031g02050.t01	Wine grape	cytosol	20.31	56.43
GSMUA_Achr6P19610_001	Banana	plastid	9.25	46.15
PGSC0003DMT400093371	Potato	cytosol	9.51	44.58
Bra000894.1-P	Field mustard	cytosol	38.05	14.81

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS
SUPFAM:SSF50447	EnsemblPlantsGene:TraesCS5A01G112400	EnsemblPlants:TraesCS5A01G112400.1	InterPro:Transl_B-barrel_sf	:	:

Description

No Description!

Coordinates

chr5A:+:219643136..219645110

Molecular Weight (calculated)

44585.7 Da

IEP (calculated)

10.596

GRAVY (calculated)

-0.621

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RCSRHRGKVK AFPKDDQQKP CHLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPPLVIVGLV AYVKTPCGLR
101: TLNSVWAQHL SEDVRRRFYK NWCKSKKKAF TKYALKYDCD AGKKEIQLQL EKMKKYATIV RVIAHTQIRK MKGLKQKKAH LMEIQINGGT IADKVDYGYK
201: FFEKEVPVEA VFQKDEMVDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKIYKMGK SGQESHEACT
301: EFDRTEKDIT PMGGFPHYGV VKGDYLMIKG CCVGPKKRVV TLRQSLLKQT SRLALEEIKL KFIDTSSKFG HGRFQTTDEK QKFYGRLKA

Best Arabidopsis Sequence Match ( AT1G43170.3 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.