Factsheet for VIT_07s0031g02050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45154	Canola	cytosol	18.57	39.39
Zm00001d002463_P001	Maize	cytosol	52.14	28.85
VIT_12s0035g01020.t01	Wine grape	cytosol	58.57	21.81
VIT_18s0072g00340.t01	Wine grape	cytosol	60.71	21.41
KRH36391	Soybean	endoplasmic reticulum	58.57	21.08
PGSC0003DMT400076546	Potato	cytosol	57.86	20.82
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	57.86	20.82
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	56.43	20.31
TraesCS5B01G118400.1	Wheat	cytosol, unclear	55.71	20.05
Os11t0168200-01	Rice	nucleus	55.0	19.79
TraesCS4A01G208000.1	Wheat	golgi, unclear	55.0	19.79
TraesCS4B01G111500.1	Wheat	cytosol	55.0	19.79
EES12864	Sorghum	cytosol, plastid	54.29	19.54
Os12t0167900-01	Rice	plastid	54.29	19.54
KXG27825	Sorghum	cytosol	53.57	19.28
Zm00001d003680_P003	Maize	cytosol	53.57	19.28
Zm00001d004839_P005	Maize	cytosol	53.57	19.28
Zm00001d004841_P002	Maize	cytosol	53.57	19.28
Zm00001d028622_P001	Maize	cytosol	53.57	19.28
KRH27524	Soybean	endoplasmic reticulum, nucleus	58.57	18.94
HORVU5Hr1G036630.1	Barley	plasma membrane	55.0	18.83
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	53.57	18.75
HORVU4Hr1G019980.1	Barley	cytosol	55.0	18.73

Protein Annotations

Gene3D:2.40.30.10	MapMan:35.1	ProteinID:CCB47138	ProteinID:CCB47138.1	UniProt:F6H4C7	EMBL:FN595233
GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	PFAM:PD001367	PFAM:PF00297
PFAM:PF00298	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L3	SUPFAM:SSF50447
InterPro:Transl_B-barrel_sf	UniParc:UPI0002109809	ArrayExpress:VIT_07s0031g02050	EnsemblPlantsGene:VIT_07s0031g02050	EnsemblPlants:VIT_07s0031g02050.t01	:

Description

No Description!

Coordinates

chr7:-:18195439..18205430

Molecular Weight (calculated)

15634.2 Da

IEP (calculated)

10.533

GRAVY (calculated)

-0.219

Length

140 amino acids

Sequence
(BLAST)

001: MAVTITAYKD NTFDFTVKSP SVTWYLKKAA RIELGSGRPG HIVASSVTLK HIYEIAKKDI TPMGGFPHCG VVKDDYVLIK GCCVGPKKRV VTLRQSLLKQ
101: TSRVALEEIK LKFIDTASKF GHGRFPTTQE KQKFYGRLKA

Best Arabidopsis Sequence Match ( AT1G43170.4 )
(BLAST)

001: MVVVGVVAYV KTPRGLRSLN TVWAQHLSEE VRRRFYKNWA KSKKKAFTGY AKQYDSEDGK KGIQAQLEKM KKYATVIRVL AHTQIRKMKG LKQKKAHMME
101: IQINGGTIAQ KVDFAYSFFE KQIPIEAVFQ KDEMIDIIGV TKGKGYEGVV TRWGVTRLPR KTHRGLRKVA CIGAWHPARV SYTVARAGQN GYHHRTELNK
201: KIYRLGKVGT EAHTAMTEYD RTEKDVTPMG GFPHYGIVKD DYLMIKGCCV GPKKRVVTLR QSLLTQTSRL ALEEIKLKFI DTASIFGHGR FQTSLEKMRF
301: YNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.