CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 6
cytosol 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36391	Soybean	endoplasmic reticulum	88.22	98.2
KRG91678	Soybean	cytosol	82.45	91.77
KRH35119	Soybean	nucleus	82.22	91.52
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	80.37	89.46
PGSC0003DMT400076546	Potato	cytosol	80.37	89.46
EES12864	Sorghum	cytosol, plastid	77.6	86.38
Zm00001d004841_P002	Maize	cytosol	77.37	86.12
Zm00001d004839_P005	Maize	cytosol	77.37	86.12
Zm00001d003680_P003	Maize	cytosol	77.37	86.12
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	77.14	85.86
Zm00001d028622_P001	Maize	cytosol	77.14	85.86
TraesCS5B01G118400.1	Wheat	cytosol, unclear	76.91	85.6
Os12t0167900-01	Rice	plastid	76.91	85.6
Os11t0168200-01	Rice	nucleus	76.91	85.6
KXG27825	Sorghum	cytosol	76.44	85.09
TraesCS4A01G208000.1	Wheat	golgi, unclear	75.98	84.58
TraesCS4B01G111500.1	Wheat	cytosol	75.98	84.58
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	77.6	84.0
Zm00001d002463_P001	Maize	cytosol	48.04	82.21
HORVU5Hr1G036630.1	Barley	plasma membrane	76.91	81.42
HORVU4Hr1G019980.1	Barley	cytosol	76.44	80.54
CDY45154	Canola	cytosol	11.09	72.73
VIT_07s0031g02050.t01	Wine grape	cytosol	18.94	58.57

Protein Annotations

EntrezGene:100792174	MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	EMBL:ACUP02007813
EnsemblPlantsGene:GLYMA_12G240600	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	UniProt:K7LWP1
EnsemblPlants:KRH27524	ProteinID:KRH27524	ProteinID:KRH27524.1	PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363
PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI00023D02C9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:39921997..39925861

Molecular Weight (calculated)

49371.1 Da

IEP (calculated)

10.695

GRAVY (calculated)

-0.637

Length

433 amino acids

Sequence
(BLAST)

001: MQCGAASGLH ISYNDKGCKR NTHSTFSLSI SRCSVAQQLN LENKMSHRKF EHPRHGSLGF LPRKRASRHR GKVKAFPKDN PSQPCRLTAF VGYKAGMTHI
101: VREVEKPGSK LHKKETCEAV TIIETPPLVV VGVVGYVKTP RGLRTLNTIW AQHLSEEVKR RFYKNWCKSK KKAFTKYSKK YETEEGKKDI ESQLEKLKKY
201: ATVIRVLAHT QIRKLKGLKQ KKAHLMEIQV NGGTVDQKVD YAYSFFEKQI PVDAVFQKDE MIDIIGVTKG KGYEGVVTRW GVTRLPRKTH RGLRKVACIG
301: AWHPARVSFT VARAGQNGYH HRTELNKKIY KVAKADQESH SAITEFDRTE KDITPMGGFP HYGVVKDDYI MVKGCCVGPK KRVITLRQSL LKQTSRVALE
401: EIKLKFIDTS SKFGHGRFQT TQEKHKFYGR LKA

Best Arabidopsis Sequence Match ( AT1G61580.1 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK AFPKDDPTKP CRLTSFLGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPPMVVVGVV GYVKTPRGLR
101: SLCTVWAQHL SEELRRRFYK NWAKSKKKAF TRYSKKHETE EGKKDIQSQL EKMKKYCSVI RVLAHTQIRK MKGLKQKKAH LNEIQINGGD IAKKVDYACS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYRVGK VGQETHSAMT
301: EYDRTEKDIT PMGGFPHYGI VKEDYLMIKG CCVGPKKRVV TLRQTLLKQT SRLAMEEIKL KFIDAASNGG HGRFQTSQEK AKFYGRTIKA

Arabidopsis Description

ARP260S ribosomal protein L3-2 [Source:UniProtKB/Swiss-Prot;Acc:P22738]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.