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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, unclear, plastid, nucleus

Predictor Summary:
  • plastid 1
  • cytosol 5
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus, plastid, unclear
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400076546 Potato cytosol 98.71 98.71
KRG91678 Soybean cytosol 92.03 92.03
VIT_18s0072g00340.t01 Wine grape cytosol 93.83 91.94
KRH35119 Soybean nucleus 91.77 91.77
KRH36391 Soybean endoplasmic reticulum 88.95 88.95
Zm00001d004841_P002 Maize cytosol 87.15 87.15
Zm00001d004839_P005 Maize cytosol 87.15 87.15
Zm00001d003680_P003 Maize cytosol 87.15 87.15
TraesCS4B01G111500.1 Wheat cytosol 87.15 87.15
EES12864 Sorghum cytosol, plastid 86.89 86.89
Zm00001d028622_P001 Maize cytosol 86.89 86.89
TraesCS5A01G112400.1 Wheat cytosol, golgi, nucleus 86.89 86.89
TraesCS4A01G208000.1 Wheat golgi, unclear 86.63 86.63
TraesCS5B01G118400.1 Wheat cytosol, unclear 86.63 86.63
Os12t0167900-01 Rice plastid 86.38 86.38
KXG27825 Sorghum cytosol 86.38 86.38
Os11t0168200-01 Rice nucleus 85.86 85.86
Zm00001d003683_P005 Maize cytosol, mitochondrion, plasma membrane, plastid 87.15 84.75
Zm00001d002463_P001 Maize cytosol 54.76 84.19
HORVU5Hr1G036630.1 Barley plasma membrane 86.89 82.64
HORVU4Hr1G019980.1 Barley cytosol 87.15 82.48
Solyc01g103510.2.1 Tomato endoplasmic reticulum, nucleus 92.55 81.26
KRH27524 Soybean endoplasmic reticulum, nucleus 89.46 80.37
CDY45154 Canola cytosol 12.08 71.21
VIT_07s0031g02050.t01 Wine grape cytosol 20.82 57.86
Protein Annotations
MapMan:17.1.2.1.1Gene3D:2.40.30.10Gene3D:3.30.1430.10Gene3D:4.10.960.10EMBL:AY456411GO:GO:0000027
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840
GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016043
GO:GO:0019538GO:GO:0022625GO:GO:0030529PFAM:PF00297ScanProsite:PS00474PANTHER:PTHR11363
PANTHER:PTHR11363:SF6UniProt:Q6SKP4InterPro:Ribosomal_L3InterPro:Ribosomal_L3_CSSUPFAM:SSF50447EnsemblPlantsGene:Solyc01g104590.2
EnsemblPlants:Solyc01g104590.2.1InterPro:Transl_B-barrel_sfUniParc:UPI000021FB26SEG:seg::
Description
Ribosomal protein L3 [Source:UniProtKB/TrEMBL;Acc:Q6SKP4]
Coordinates
chr1:-:93041463..93044901
Molecular Weight (calculated)
44410.5 Da
IEP (calculated)
10.764
GRAVY (calculated)
-0.583
Length
389 amino acids
Sequence
(BLAST)
001: MSHRKFEHPR HGSLGFLPRK RAARHRGKVK AFPKDDPSKP CKLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIVE TPPMVIVGVV GYVKTPRGLR
101: CLNTVWAQHL SEDIKRRFYK NWCKSKKKAF LKYSKKYETD EGKKDIQAQL EKLKKYACVI RVLAHTQIRK MKGLKQKKAH LMEIQVNGGS IAQKVDFAYG
201: FFEKQVPVDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSFTVARA GQNGYHHRTE MNKKVYKLGK VGQESHTALT
301: EFDRTEKDIT PIGGFPHYGV VKEDYLLIKG CCVGTKKRVV TLRQSLLNQT SRVALEEIKL KFIDTSSKFG HGRFQTTQEK QKFYGRLKA
Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)
001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK
Arabidopsis Description
ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.