Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, unclear, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 5
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
26371478
unclear: 26455813 nucleus: 28394025 endoplasmic reticulum: 29145071 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400076546 | Potato | cytosol | 98.71 | 98.71 |
KRG91678 | Soybean | cytosol | 92.03 | 92.03 |
VIT_18s0072g00340.t01 | Wine grape | cytosol | 93.83 | 91.94 |
KRH35119 | Soybean | nucleus | 91.77 | 91.77 |
KRH36391 | Soybean | endoplasmic reticulum | 88.95 | 88.95 |
Zm00001d004841_P002 | Maize | cytosol | 87.15 | 87.15 |
Zm00001d004839_P005 | Maize | cytosol | 87.15 | 87.15 |
Zm00001d003680_P003 | Maize | cytosol | 87.15 | 87.15 |
TraesCS4B01G111500.1 | Wheat | cytosol | 87.15 | 87.15 |
EES12864 | Sorghum | cytosol, plastid | 86.89 | 86.89 |
Zm00001d028622_P001 | Maize | cytosol | 86.89 | 86.89 |
TraesCS5A01G112400.1 | Wheat | cytosol, golgi, nucleus | 86.89 | 86.89 |
TraesCS4A01G208000.1 | Wheat | golgi, unclear | 86.63 | 86.63 |
TraesCS5B01G118400.1 | Wheat | cytosol, unclear | 86.63 | 86.63 |
Os12t0167900-01 | Rice | plastid | 86.38 | 86.38 |
KXG27825 | Sorghum | cytosol | 86.38 | 86.38 |
Os11t0168200-01 | Rice | nucleus | 85.86 | 85.86 |
Zm00001d003683_P005 | Maize | cytosol, mitochondrion, plasma membrane, plastid | 87.15 | 84.75 |
Zm00001d002463_P001 | Maize | cytosol | 54.76 | 84.19 |
HORVU5Hr1G036630.1 | Barley | plasma membrane | 86.89 | 82.64 |
HORVU4Hr1G019980.1 | Barley | cytosol | 87.15 | 82.48 |
Solyc01g103510.2.1 | Tomato | endoplasmic reticulum, nucleus | 92.55 | 81.26 |
KRH27524 | Soybean | endoplasmic reticulum, nucleus | 89.46 | 80.37 |
CDY45154 | Canola | cytosol | 12.08 | 71.21 |
VIT_07s0031g02050.t01 | Wine grape | cytosol | 20.82 | 57.86 |
Protein Annotations
MapMan:17.1.2.1.1 | Gene3D:2.40.30.10 | Gene3D:3.30.1430.10 | Gene3D:4.10.960.10 | EMBL:AY456411 | GO:GO:0000027 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 | PFAM:PF00297 | ScanProsite:PS00474 | PANTHER:PTHR11363 |
PANTHER:PTHR11363:SF6 | UniProt:Q6SKP4 | InterPro:Ribosomal_L3 | InterPro:Ribosomal_L3_CS | SUPFAM:SSF50447 | EnsemblPlantsGene:Solyc01g104590.2 |
EnsemblPlants:Solyc01g104590.2.1 | InterPro:Transl_B-barrel_sf | UniParc:UPI000021FB26 | SEG:seg | : | : |
Description
Ribosomal protein L3 [Source:UniProtKB/TrEMBL;Acc:Q6SKP4]
Coordinates
chr1:-:93041463..93044901
Molecular Weight (calculated)
44410.5 Da
IEP (calculated)
10.764
GRAVY (calculated)
-0.583
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHRKFEHPR HGSLGFLPRK RAARHRGKVK AFPKDDPSKP CKLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIVE TPPMVIVGVV GYVKTPRGLR
101: CLNTVWAQHL SEDIKRRFYK NWCKSKKKAF LKYSKKYETD EGKKDIQAQL EKLKKYACVI RVLAHTQIRK MKGLKQKKAH LMEIQVNGGS IAQKVDFAYG
201: FFEKQVPVDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSFTVARA GQNGYHHRTE MNKKVYKLGK VGQESHTALT
301: EFDRTEKDIT PIGGFPHYGV VKEDYLLIKG CCVGTKKRVV TLRQSLLNQT SRVALEEIKL KFIDTSSKFG HGRFQTTQEK QKFYGRLKA
101: CLNTVWAQHL SEDIKRRFYK NWCKSKKKAF LKYSKKYETD EGKKDIQAQL EKLKKYACVI RVLAHTQIRK MKGLKQKKAH LMEIQVNGGS IAQKVDFAYG
201: FFEKQVPVDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSFTVARA GQNGYHHRTE MNKKVYKLGK VGQESHTALT
301: EFDRTEKDIT PIGGFPHYGV VKEDYLLIKG CCVGTKKRVV TLRQSLLNQT SRVALEEIKL KFIDTSSKFG HGRFQTTQEK QKFYGRLKA
001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK
Arabidopsis Description
ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.