Factsheet for TraesCS4A01G208000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G109200.1	Wheat	cytosol, golgi, unclear	99.23	99.23
TraesCS4B01G111500.1	Wheat	cytosol	99.23	99.23
Zm00001d028622_P001	Maize	cytosol	94.09	94.09
Zm00001d004841_P002	Maize	cytosol	94.09	94.09
Zm00001d004839_P005	Maize	cytosol	94.09	94.09
Zm00001d003680_P003	Maize	cytosol	94.09	94.09
HORVU4Hr1G019980.1	Barley	cytosol	99.23	93.92
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	93.57	93.57
KXG27825	Sorghum	cytosol	93.32	93.32
Os11t0168200-01	Rice	nucleus	93.06	93.06
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	94.09	91.5
GSMUA_Achr11P...	Banana	cytosol, plastid	87.92	87.92
GSMUA_Achr5P01070_001	Banana	cytosol	87.15	87.15
GSMUA_Achr7P03150_001	Banana	plasma membrane	87.15	87.15
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	86.63	86.63
KRG91678	Soybean	cytosol	85.86	85.86
KRH35119	Soybean	nucleus	85.6	85.6
VIT_18s0072g00340.t01	Wine grape	cytosol	86.89	85.14
GSMUA_Achr5P01330_001	Banana	cytosol	85.09	85.09
AT1G43170.1	Thale cress	cytosol	84.32	84.32
KRH36391	Soybean	endoplasmic reticulum	84.06	84.06
Bra038589.1-P	Field mustard	cytosol	83.29	83.29
CDY26350	Canola	cytosol	44.47	83.17
CDY03838	Canola	cytosol, mitochondrion	44.47	83.17
AT1G61580.1	Thale cress	cytosol	83.29	83.08
Bra024986.1-P	Field mustard	cytosol	83.29	82.86
Bra031423.1-P	Field mustard	cytosol	82.78	82.78
CDY15022	Canola	cytosol	44.22	82.69
Bra024985.1-P	Field mustard	cytosol	73.26	82.61
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	82.78	82.35
VIT_12s0035g01020.t01	Wine grape	cytosol	79.43	82.18
CDY33488	Canola	extracellular	75.06	81.34
CDY52305	Canola	cytosol	75.06	81.34
CDX77707	Canola	cytosol	75.06	81.34
CDY72003	Canola	cytosol	65.3	81.15
CDY33490	Canola	cytosol	65.3	81.15
CDY68012	Canola	cytosol	75.06	81.11
CDY02391	Canola	extracellular	74.81	81.06
CDY12965	Canola	cytosol	74.55	80.78
Bra027986.1-P	Field mustard	cytosol	73.52	80.56
GSMUA_AchrUn_...	Banana	cytosol	86.89	79.53
CDY15023	Canola	cytosol	21.34	79.05
KRH27524	Soybean	endoplasmic reticulum, nucleus	84.58	75.98
Bra027830.1-P	Field mustard	cytosol	42.16	75.23
CDY26351	Canola	cytosol	19.79	74.76
CDY03839	Canola	cytosol	19.79	74.76
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	83.03	72.91
CDY45154	Canola	cytosol	10.8	63.64
VIT_07s0031g02050.t01	Wine grape	cytosol	19.79	55.0
GSMUA_Achr6P19610_001	Banana	plastid	9.25	46.15
PGSC0003DMT400093371	Potato	cytosol	9.25	43.37
Bra000894.1-P	Field mustard	cytosol	37.53	14.61

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS
SUPFAM:SSF50447	EnsemblPlantsGene:TraesCS4A01G208000	EnsemblPlants:TraesCS4A01G208000.1	InterPro:Transl_B-barrel_sf	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:501132294..501134463

Molecular Weight (calculated)

44592.6 Da

IEP (calculated)

10.716

GRAVY (calculated)

-0.634

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RCSRHRGKVK AFPRDDQSKK CHLTAFLGYK SGMTHIVREV EKPGSKLHKK ETCEAVTIVE TPPIVIVGLV AYVKTPRGLR
101: TLNSVWAQHL SEDVRRRFYK NWCKSKKKAF TKYALKYDSD AGKKEIHMQL EKMKKYATVV RVIAHTQIRK MKGLKQKKAH LMEIQINGGT IADKVDYGYS
201: FFEKEVPIDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYKIGK VGQETHDAST
301: EFDRTEKDIT PMGGFPHYGV VKADYLMIKG CCVGPKKRVV TLRQSLLKQT SRLALEEIKL KFVDTSSKFG HGRFQTTDEK QRFYGKLKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.