CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26350	Canola	cytosol	97.6	97.6
CDY15022	Canola	cytosol	96.63	96.63
Zm00001d002463_P001	Maize	cytosol	81.25	66.8
CDY68012	Canola	cytosol	99.04	57.22
CDY72003	Canola	cytosol	78.85	52.4
CDY33490	Canola	cytosol	78.85	52.4
VIT_12s0035g01020.t01	Wine grape	cytosol	88.46	48.94
AT1G61580.1	Thale cress	cytosol	91.35	48.72
CDY45154	Canola	cytosol	15.38	48.48
PGSC0003DMT400064116	Potato	cytosol	87.5	46.79
CDY33488	Canola	extracellular	79.33	45.96
CDY52305	Canola	cytosol	78.85	45.68
CDX77707	Canola	cytosol	78.85	45.68
CDY12965	Canola	cytosol	78.37	45.4
CDY02391	Canola	extracellular	78.37	45.4
Zm00001d028622_P001	Maize	cytosol	83.65	44.73
Zm00001d004839_P005	Maize	cytosol	83.65	44.73
Zm00001d004841_P002	Maize	cytosol	83.65	44.73
Zm00001d003680_P003	Maize	cytosol	83.65	44.73
KXG27825	Sorghum	cytosol	83.17	44.47
TraesCS4A01G208000.1	Wheat	golgi, unclear	83.17	44.47
EES12864	Sorghum	cytosol, plastid	83.17	44.47
TraesCS4B01G111500.1	Wheat	cytosol	82.69	44.22
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	82.69	44.22
TraesCS5B01G118400.1	Wheat	cytosol, unclear	82.21	43.96
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	83.65	43.5
Os11t0168200-01	Rice	nucleus	81.25	43.44
Os12t0167900-01	Rice	plastid	80.77	43.19
HORVU4Hr1G019980.1	Barley	cytosol	82.69	41.85
HORVU5Hr1G036630.1	Barley	plasma membrane	82.21	41.81
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	87.02	40.86
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	12.5	11.06
CDY15023	Canola	cytosol	0.96	1.9
CDY26351	Canola	cytosol	0.48	0.97
CDY03839	Canola	cytosol	0.48	0.97

Protein Annotations

Gene3D:2.40.30.10	MapMan:35.1	GO:A0A078EW99	EnsemblPlants:CDY03838	ProteinID:CDY03838	ProteinID:CDY03838.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00117296001	PFAM:PF00297	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6
InterPro:Ribosomal_L3	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI0004EDC46B	:	:

Description

BnaC01g29550D

Coordinates

chrLK031946:-:1079012..1079725

Molecular Weight (calculated)

23643.9 Da

IEP (calculated)

10.416

GRAVY (calculated)

-0.561

Length

208 amino acids

Sequence
(BLAST)

001: MKKYCTVIRV LAHTQIRKMK GLKQKKAHLN EIQVNGGDTA KKVDYAYSLF EKQVPVDAIF QKDEMIDIIG VTKGKAWHPA RVSYTVARAG QNGYHHRTEM
101: NKKIYRLGKV GQETHTAMTE FDRTEKEITP MGGFPHYGIV KDDYLLIKGC CVGPKKRVVT LRQTLLKQTS RVALEEIKLK FIDTASNGGH GRFQTAEEKA
201: KFYGRLKA

Best Arabidopsis Sequence Match ( AT1G43170.4 )
(BLAST)

001: MVVVGVVAYV KTPRGLRSLN TVWAQHLSEE VRRRFYKNWA KSKKKAFTGY AKQYDSEDGK KGIQAQLEKM KKYATVIRVL AHTQIRKMKG LKQKKAHMME
101: IQINGGTIAQ KVDFAYSFFE KQIPIEAVFQ KDEMIDIIGV TKGKGYEGVV TRWGVTRLPR KTHRGLRKVA CIGAWHPARV SYTVARAGQN GYHHRTELNK
201: KIYRLGKVGT EAHTAMTEYD RTEKDVTPMG GFPHYGIVKD DYLMIKGCCV GPKKRVVTLR QSLLTQTSRL ALEEIKLKFI DTASIFGHGR FQTSLEKMRF
301: YNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.