Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031423.1-P | Field mustard | cytosol | 92.82 | 93.06 |
| Bra038589.1-P | Field mustard | cytosol | 92.56 | 92.8 |
| CDY68012 | Canola | cytosol | 85.13 | 92.22 |
| CDY03838 | Canola | cytosol, mitochondrion | 48.72 | 91.35 |
| CDY26350 | Canola | cytosol | 48.46 | 90.87 |
| CDY15023 | Canola | cytosol | 24.36 | 90.48 |
| CDY15022 | Canola | cytosol | 47.95 | 89.9 |
| PGSC0003DMT400064116 | Potato | cytosol | 87.95 | 88.17 |
| VIT_12s0035g01020.t01 | Wine grape | cytosol | 83.33 | 86.44 |
| CDY03839 | Canola | cytosol | 22.82 | 86.41 |
| AT1G43170.1 | Thale cress | cytosol | 85.64 | 85.86 |
| CDY26351 | Canola | cytosol | 22.56 | 85.44 |
| Zm00001d004841_P002 | Maize | cytosol | 84.87 | 85.09 |
| Zm00001d004839_P005 | Maize | cytosol | 84.87 | 85.09 |
| Zm00001d003680_P003 | Maize | cytosol | 84.87 | 85.09 |
| Zm00001d028622_P001 | Maize | cytosol | 84.62 | 84.83 |
| EES12864 | Sorghum | cytosol, plastid | 84.36 | 84.58 |
| Os11t0168200-01 | Rice | nucleus | 84.36 | 84.58 |
| KXG27825 | Sorghum | cytosol | 84.1 | 84.32 |
| Bra027830.1-P | Field mustard | cytosol | 46.92 | 83.94 |
| Os12t0167900-01 | Rice | plastid | 83.59 | 83.8 |
| TraesCS4B01G111500.1 | Wheat | cytosol | 83.33 | 83.55 |
| TraesCS5A01G112400.1 | Wheat | cytosol, golgi, nucleus | 83.33 | 83.55 |
| TraesCS4A01G208000.1 | Wheat | golgi, unclear | 83.08 | 83.29 |
| TraesCS5B01G118400.1 | Wheat | cytosol, unclear | 83.08 | 83.29 |
| Zm00001d003683_P005 | Maize | cytosol, mitochondrion, plasma membrane, plastid | 84.87 | 82.75 |
| Zm00001d002463_P001 | Maize | cytosol | 52.05 | 80.24 |
| HORVU4Hr1G019980.1 | Barley | cytosol | 83.33 | 79.08 |
| HORVU5Hr1G036630.1 | Barley | plasma membrane | 82.82 | 78.97 |
| Solyc01g103510.2.1 | Tomato | endoplasmic reticulum, nucleus | 88.72 | 78.1 |
| GSMUA_Achr6P19610_001 | Banana | plastid | 8.72 | 43.59 |
| TraesCS4D01G109300.1 | Wheat | cytosol, golgi, nucleus | 10.51 | 17.45 |
| Bra000894.1-P | Field mustard | cytosol | 38.46 | 15.02 |
Protein Annotations
| MapMan:17.1.2.1.1 | Gene3D:2.40.30.10 | Gene3D:3.30.1430.10 | Gene3D:4.10.960.10 | EntrezGene:842454 | ProteinID:AAA66161.1 |
| ProteinID:AAD25547.1 | ProteinID:AEE33859.1 | ArrayExpress:AT1G61580 | EnsemblPlantsGene:AT1G61580 | RefSeq:AT1G61580 | TAIR:AT1G61580 |
| RefSeq:AT1G61580-TAIR-G | EnsemblPlants:AT1G61580.1 | TAIR:AT1G61580.1 | Unigene:At.36412 | EMBL:BT003869 | EMBL:BT005702 |
| GO:GO:0000027 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 | RefSeq:NP_176352.1 |
| UniProt:P22738 | PFAM:PF00297 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00474 | PANTHER:PTHR11363 | PANTHER:PTHR11363:SF6 | Symbol:RPL3B |
| InterPro:Ribosomal_L3 | InterPro:Ribosomal_L3_CS | SUPFAM:SSF50447 | InterPro:Transl_B-barrel_sf | UniParc:UPI000000C1B1 | SEG:seg |
Description
ARP260S ribosomal protein L3-2 [Source:UniProtKB/Swiss-Prot;Acc:P22738]
Coordinates
chr1:-:22720560..22723152
Molecular Weight (calculated)
44548.6 Da
IEP (calculated)
10.779
GRAVY (calculated)
-0.677
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK AFPKDDPTKP CRLTSFLGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPPMVVVGVV GYVKTPRGLR
101: SLCTVWAQHL SEELRRRFYK NWAKSKKKAF TRYSKKHETE EGKKDIQSQL EKMKKYCSVI RVLAHTQIRK MKGLKQKKAH LNEIQINGGD IAKKVDYACS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYRVGK VGQETHSAMT
301: EYDRTEKDIT PMGGFPHYGI VKEDYLMIKG CCVGPKKRVV TLRQTLLKQT SRLAMEEIKL KFIDAASNGG HGRFQTSQEK AKFYGRTIKA
101: SLCTVWAQHL SEELRRRFYK NWAKSKKKAF TRYSKKHETE EGKKDIQSQL EKMKKYCSVI RVLAHTQIRK MKGLKQKKAH LNEIQINGGD IAKKVDYACS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYRVGK VGQETHSAMT
301: EYDRTEKDIT PMGGFPHYGI VKEDYLMIKG CCVGPKKRVV TLRQTLLKQT SRLAMEEIKL KFIDAASNGG HGRFQTSQEK AKFYGRTIKA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.