Factsheet for GSMUA_Achr6P19610_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P03150_001	Banana	plasma membrane	48.72	9.77
GSMUA_Achr11P...	Banana	cytosol, plastid	47.44	9.51
GSMUA_Achr5P01070_001	Banana	cytosol	47.44	9.51
TraesCS5B01G118400.1	Wheat	cytosol, unclear	47.44	9.51
Zm00001d028622_P001	Maize	cytosol	46.15	9.25
TraesCS4A01G208000.1	Wheat	golgi, unclear	46.15	9.25
Zm00001d004841_P002	Maize	cytosol	46.15	9.25
Zm00001d004839_P005	Maize	cytosol	46.15	9.25
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	46.15	9.25
Zm00001d003680_P003	Maize	cytosol	46.15	9.25
HORVU5Hr1G036630.1	Barley	plasma membrane	47.44	9.05
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	46.15	9.0
TraesCS4B01G111500.1	Wheat	cytosol	44.87	9.0
KXG27825	Sorghum	cytosol	44.87	9.0
EES12864	Sorghum	cytosol, plastid	44.87	9.0
HORVU4Hr1G019980.1	Barley	cytosol	46.15	8.76
PGSC0003DMT400064116	Potato	cytosol	43.59	8.74
AT1G61580.1	Thale cress	cytosol	43.59	8.72
GSMUA_AchrUn_...	Banana	cytosol	47.44	8.71
Os12t0167900-01	Rice	plastid	42.31	8.48
Os11t0168200-01	Rice	nucleus	42.31	8.48
GSMUA_Achr5P01330_001	Banana	cytosol	42.31	8.48
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	44.87	7.9
VIT_12s0035g01020.t01	Wine grape	cytosol	29.49	6.12
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	5.13	1.7
Zm00001d002463_P001	Maize	cytosol	1.28	0.4
Bra027830.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

MapMan:35.2	Gene3D:4.10.960.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G19610_001	EnsemblPlants:GSMUA_Achr6P19610_001
EnsemblPlants:GSMUA_Achr6T19610_001	UniProt:M0T8F9	PFAM:PF00297	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3
SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI0002956C8F	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G19610_001]

Coordinates

chr6:+:13898655..13899614

Molecular Weight (calculated)

8715.8 Da

IEP (calculated)

11.326

GRAVY (calculated)

-0.151

Length

78 amino acids

Sequence
(BLAST)

1: MFLILQSLVL DFIQGKEDIS SEVGAPKARS LGFLPRKRAS RHRGKVLSFP RMNQQNPCKL TAFLGYKSGM TTRTVSVC

Best Arabidopsis Sequence Match ( AT1G43170.3 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.