Factsheet for GSMUA_Achr5P01070_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, plastid	94.86	94.86
GSMUA_Achr7P03150_001	Banana	plasma membrane	93.83	93.83
EES12864	Sorghum	cytosol, plastid	89.2	89.2
GSMUA_Achr5P01330_001	Banana	cytosol	88.69	88.69
Zm00001d004841_P002	Maize	cytosol	88.69	88.69
Zm00001d004839_P005	Maize	cytosol	88.69	88.69
Zm00001d003680_P003	Maize	cytosol	88.69	88.69
Zm00001d028622_P001	Maize	cytosol	88.43	88.43
KXG27825	Sorghum	cytosol	88.43	88.43
Os11t0168200-01	Rice	nucleus	88.17	88.17
TraesCS5B01G118400.1	Wheat	cytosol, unclear	87.66	87.66
Os12t0167900-01	Rice	plastid	87.4	87.4
TraesCS4B01G111500.1	Wheat	cytosol	87.4	87.4
TraesCS4A01G208000.1	Wheat	golgi, unclear	87.15	87.15
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	87.15	87.15
GSMUA_AchrUn_...	Banana	cytosol	94.6	86.59
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	88.69	86.25
Zm00001d002463_P001	Maize	cytosol	54.76	84.19
HORVU5Hr1G036630.1	Barley	plasma membrane	87.66	83.37
HORVU4Hr1G019980.1	Barley	cytosol	87.4	82.73
GSMUA_Achr6P19610_001	Banana	plastid	9.51	47.44

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr5G01070_001	EnsemblPlants:GSMUA_Achr5P01070_001	EnsemblPlants:GSMUA_Achr5T01070_001	UniProt:M0SUN6	PFAM:PF00297
ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447
InterPro:Transl_B-barrel_sf	UniParc:UPI000294C2A7	SEG:seg	:	:	:

Description

60S ribosomal protein L3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G01070_001]

Coordinates

chr5:+:621462..625322

Molecular Weight (calculated)

44518.4 Da

IEP (calculated)

10.832

GRAVY (calculated)

-0.636

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK SFPRDDPTKS CKLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPPMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWCKSKKKAF TTYSKKFDSE EGKKEVQVQL EKMKKYGSVI RVLAHTQIRK MKGLKQKKAH LMEIQVNGGT VAQKVDFAYS
201: FFEKQVPIDA VFQKDEMIDV IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKIYKIGK SGDESHTAIT
301: EFDRTEKDIT PMGGFPHYGI VNHDYLLIKG CCVGPKKRVV TLRQSLLKQT SRVALEEIKL KFIDTSSKFG HGRFQTTQEK QKFYGRLKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.