Factsheet for GSMUA_Achr7P03150_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, plastid	95.12	95.12
GSMUA_Achr5P01070_001	Banana	cytosol	93.83	93.83
GSMUA_Achr5P01330_001	Banana	cytosol	90.23	90.23
EES12864	Sorghum	cytosol, plastid	88.69	88.69
Os11t0168200-01	Rice	nucleus	88.69	88.69
GSMUA_AchrUn_...	Banana	cytosol	96.66	88.47
Zm00001d004841_P002	Maize	cytosol	88.43	88.43
Zm00001d004839_P005	Maize	cytosol	88.43	88.43
KXG27825	Sorghum	cytosol	88.43	88.43
Zm00001d003680_P003	Maize	cytosol	88.43	88.43
Zm00001d028622_P001	Maize	cytosol	88.17	88.17
TraesCS5B01G118400.1	Wheat	cytosol, unclear	87.92	87.92
Os12t0167900-01	Rice	plastid	87.92	87.92
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	87.4	87.4
TraesCS4A01G208000.1	Wheat	golgi, unclear	87.15	87.15
TraesCS4B01G111500.1	Wheat	cytosol	86.89	86.89
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	88.43	86.0
HORVU5Hr1G036630.1	Barley	plasma membrane	87.92	83.62
Zm00001d002463_P001	Maize	cytosol	54.24	83.4
HORVU4Hr1G019980.1	Barley	cytosol	86.89	82.24
GSMUA_Achr6P19610_001	Banana	plastid	9.77	48.72

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr7G03150_001	EnsemblPlants:GSMUA_Achr7P03150_001	EnsemblPlants:GSMUA_Achr7T03150_001	UniProt:M0TEA5	PFAM:PF00297
ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447
InterPro:Transl_B-barrel_sf	UniParc:UPI000295C040	SEG:seg	:	:	:

Description

60S ribosomal protein L3 [Source:GMGC_GENE;Acc:GSMUA_Achr7G03150_001]

Coordinates

chr7:-:2487650..2491802

Molecular Weight (calculated)

44672.8 Da

IEP (calculated)

10.821

GRAVY (calculated)

-0.672

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK SFPKDDPRKP CKLTAFLGYK SGMTHIVREV DKPGSKLHKK ETCEAVTIIE TPPMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK SWCKSKKKAF TKYSKKYESE EGKKEIQVQL EKMKKYASVV RVLAHTQIRK MKGLKQKKAH LMEIQVNGGT VAQKVDFAYS
201: FFEKQIPIDA VFQKDEMIDV IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKIYKVGK TGDESHSAIT
301: EFDRTEKDIT PMGGFPHYGI VKDDYIMIKG CCVGPKKRVV TLRQSLLKQT SRLALEEIKL KFIDTSSKFG HGRFQTTEEK RKFYGRMKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.