Factsheet for Bra027830.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002463_P001	Maize	cytosol	61.01	52.57
Bra031423.1-P	Field mustard	cytosol	90.37	50.64
Bra038589.1-P	Field mustard	cytosol	88.99	49.87
Bra024985.1-P	Field mustard	cytosol	78.44	49.57
VIT_12s0035g01020.t01	Wine grape	cytosol	81.65	47.34
AT1G61580.1	Thale cress	cytosol	83.94	46.92
Bra027986.1-P	Field mustard	cytosol	75.23	46.2
PGSC0003DMT400064116	Potato	cytosol	79.36	44.47
Bra024986.1-P	Field mustard	cytosol	78.44	43.73
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	77.98	43.48
Zm00001d004839_P005	Maize	cytosol	76.61	42.93
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	76.61	42.93
Zm00001d003680_P003	Maize	cytosol	76.61	42.93
Zm00001d004841_P002	Maize	cytosol	76.61	42.93
Zm00001d028622_P001	Maize	cytosol	76.61	42.93
Os11t0168200-01	Rice	nucleus	76.15	42.67
EES12864	Sorghum	cytosol, plastid	76.15	42.67
TraesCS5B01G118400.1	Wheat	cytosol, unclear	76.15	42.67
KXG27825	Sorghum	cytosol	75.69	42.42
TraesCS4B01G111500.1	Wheat	cytosol	75.69	42.42
Os12t0167900-01	Rice	plastid	75.23	42.16
TraesCS4A01G208000.1	Wheat	golgi, unclear	75.23	42.16
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	76.61	41.75
HORVU4Hr1G019980.1	Barley	cytosol	75.69	40.15
HORVU5Hr1G036630.1	Barley	plasma membrane	74.77	39.85
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	79.36	39.05
Bra000894.1-P	Field mustard	cytosol	54.59	11.91
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	11.01	10.21
GSMUA_Achr6P19610_001	Banana	plastid	0.0	0.0

Protein Annotations

Gene3D:2.40.30.10	MapMan:35.1	EnsemblPlantsGene:Bra027830	EnsemblPlants:Bra027830.1	EnsemblPlants:Bra027830.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	UniProt:M4EGB6	PFAM:PF00297	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3
SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI000254274F	SEG:seg	:	:

Description

AT1G61580 (E=3e-065) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome

Coordinates

chrA09:+:9046852..9047508

Molecular Weight (calculated)

25298.9 Da

IEP (calculated)

10.725

GRAVY (calculated)

-0.741

Length

218 amino acids

Sequence
(BLAST)

001: MSEEVRRRFY KNGAKSKKKA FTKYSKKHET EDGKKDIQTH LEKMMKLCTV IRVLTHTQIR KMKGLRQKKA HLNEIQIIVV SARVACIGAW HPARVSYTVA
101: RAGQNGYHHR TEMNKKIYRL GKVGEETHTA MTEFDRTEKE RFPHYGIVKD DYLLIRGCCV GPKKRVVTLR QTLLKQTSRV ALEEEIKLKF IDTSSNGGHG
201: RFQTAEEKAK FYGRVFKA

Best Arabidopsis Sequence Match ( AT1G43170.4 )
(BLAST)

001: MVVVGVVAYV KTPRGLRSLN TVWAQHLSEE VRRRFYKNWA KSKKKAFTGY AKQYDSEDGK KGIQAQLEKM KKYATVIRVL AHTQIRKMKG LKQKKAHMME
101: IQINGGTIAQ KVDFAYSFFE KQIPIEAVFQ KDEMIDIIGV TKGKGYEGVV TRWGVTRLPR KTHRGLRKVA CIGAWHPARV SYTVARAGQN GYHHRTELNK
201: KIYRLGKVGT EAHTAMTEYD RTEKDVTPMG GFPHYGIVKD DYLMIKGCCV GPKKRVVTLR QSLLTQTSRL ALEEIKLKFI DTASIFGHGR FQTSLEKMRF
301: YNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.