Factsheet for TraesCS5D01G129200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G118400.1	Wheat	cytosol, unclear	99.23	99.23
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	98.97	98.97
Os12t0167900-01	Rice	plastid	94.86	94.86
TraesCS4D01G109200.1	Wheat	cytosol, golgi, unclear	94.09	94.09
HORVU5Hr1G036630.1	Barley	plasma membrane	98.2	93.4
PGSC0003DMT400093371	Potato	cytosol	9.77	45.78
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	9.77	16.17

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS
SUPFAM:SSF50447	EnsemblPlantsGene:TraesCS5D01G129200	EnsemblPlants:TraesCS5D01G129200.1	InterPro:Transl_B-barrel_sf	:	:

Description

No Description!

Coordinates

chr5D:+:202850025..202852099

Molecular Weight (calculated)

44624.7 Da

IEP (calculated)

10.677

GRAVY (calculated)

-0.655

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RCSRHRGKVK SFPKDDQQKP CHLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPPLVIVGLV AYVKTPRGLR
101: TLNSVWAQHL SEDVRRRFYK NWCKSKKKAF TKYALKYDSD AGKKEIQLQL EKMKKYATIV RVIAHTQIRK MKGLKQKKAH LMEIQVNGGT IADKVDYGYK
201: FFEKEVPVEA VFQKDEMVDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKIYKMGK SGQESHEACT
301: EFDRTEKDIT PMGGFPHYGV VKGDYLMIKG CCVGPKKRVV TLRQSLLKQT SRLALEEIKL KFIDTSSKFG HGRFQTTDEK QKFYGRLKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.