Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plasma membrane: 23353019 plasma membrane: 27341663 |
msms PMID:
23353019
doi
University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93336 | Sorghum | cytosol | 94.12 | 93.81 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 89.87 | 86.75 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 90.2 | 86.25 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 89.87 | 85.67 |
| Os03t0787000-01 | Rice | plasma membrane | 91.18 | 84.55 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 69.28 | 77.37 |
| Zm00001d013115_P001 | Maize | cytosol | 35.95 | 75.34 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 61.11 | 73.33 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 72.55 | 71.38 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 61.44 | 64.38 |
| PGSC0003DMT400072325 | Potato | cytosol | 60.13 | 60.93 |
| Solyc10g081850.1.1 | Tomato | cytosol | 60.13 | 60.73 |
| Solyc01g006950.2.1 | Tomato | nucleus | 59.15 | 60.33 |
| PGSC0003DMT400054965 | Potato | cytosol | 58.17 | 59.33 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 61.76 | 58.33 |
| KRH32862 | Soybean | cytosol | 57.19 | 57.19 |
| KRH72168 | Soybean | cytosol | 56.86 | 57.05 |
| CDY70958 | Canola | cytosol | 60.78 | 55.86 |
| Bra001422.1-P | Field mustard | cytosol | 60.78 | 55.86 |
| CDX73851 | Canola | cytosol | 60.78 | 55.69 |
| Zm00001d053607_P001 | Maize | cytosol | 56.21 | 54.95 |
| KRH72169 | Soybean | cytosol | 59.8 | 54.63 |
| Zm00001d046482_P001 | Maize | cytosol | 54.9 | 54.37 |
| Zm00001d036931_P001 | Maize | cytosol | 54.9 | 54.37 |
| KRH32861 | Soybean | mitochondrion | 58.5 | 53.92 |
| CDY01061 | Canola | cytosol, plastid | 58.5 | 53.43 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 60.13 | 53.18 |
| CDY08492 | Canola | cytosol | 58.17 | 52.51 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 55.23 | 52.0 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 26.14 | 51.61 |
| KRH68016 | Soybean | cytosol | 49.35 | 51.36 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 49.35 | 50.17 |
| AT3G52400.1 | Thale cress | cytosol | 53.92 | 48.39 |
| Bra033436.1-P | Field mustard | cytosol | 52.29 | 46.78 |
| CDY23212 | Canola | cytosol | 52.29 | 46.65 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 46.41 | 46.1 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 50.0 | 45.81 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 50.0 | 45.54 |
| Zm00001d013323_P001 | Maize | cytosol | 43.46 | 42.36 |
| Zm00001d041716_P002 | Maize | cytosol | 43.46 | 41.96 |
| Zm00001d033919_P001 | Maize | plasma membrane | 42.81 | 41.85 |
| Zm00001d007902_P001 | Maize | mitochondrion, plasma membrane | 40.85 | 41.12 |
| CDX95336 | Canola | cytosol | 12.75 | 37.14 |
| Zm00001d021664_P001 | Maize | cytosol | 40.52 | 34.83 |
| Zm00001d018867_P002 | Maize | plastid | 41.18 | 32.23 |
| Zm00001d035331_P001 | Maize | cytosol | 27.45 | 28.19 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | UniProt:A0A1D6L6W5 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | InterPro:IPR000727 | ProteinID:ONM10033.1 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI0002214F66 | EnsemblPlantsGene:Zm00001d034365 | EnsemblPlants:Zm00001d034365_P001 | EnsemblPlants:Zm00001d034365_T001 | SEG:seg |
Description
Syntaxin 121
Coordinates
chr1:+:290916309..290917229
Molecular Weight (calculated)
33219.7 Da
IEP (calculated)
8.723
GRAVY (calculated)
-0.292
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSLFSSSWK RDGGDIESGG VEMSAPPGAA AGASLDRFFE DVESIKDELR DLERIQRSLH DANEGGKSMH DAAAVRGLRA RMDADVAAAI KKAKVVKLRL
101: ESLDRANAAN RSVPGCGPGS STDRTRTSVV AGLRKKLRDS MESFSSLRSR VAAEYRDTVA RRYFTVTGAQ PDEATLDALA ESGEGERFLQ RAIAEQGQGR
201: GEVLGVVAEI QERHGAVAGL ERSLLELQQV FNDMAVLVAA QGEQLDDIEG NVGRARSFVD RGREQLQVAR KHQKSTRKWT CIAILILLVI ILVIVLPIVL
301: KGVNKN
101: ESLDRANAAN RSVPGCGPGS STDRTRTSVV AGLRKKLRDS MESFSSLRSR VAAEYRDTVA RRYFTVTGAQ PDEATLDALA ESGEGERFLQ RAIAEQGQGR
201: GEVLGVVAEI QERHGAVAGL ERSLLELQQV FNDMAVLVAA QGEQLDDIEG NVGRARSFVD RGREQLQVAR KHQKSTRKWT CIAILILLVI ILVIVLPIVL
301: KGVNKN
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.