Factsheet for Zm00001d019666_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT4G32070.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT4G32070.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96429	Sorghum	plastid	63.54	63.4
KRG84467	Soybean	cytosol	8.41	60.0
KRH05201	Soybean	cytosol	17.91	55.15
GSMUA_Achr7P05370_001	Banana	cytosol	37.76	53.68
GSMUA_Achr4P20360_001	Banana	cytosol	38.51	53.28
GSMUA_Achr3P00890_001	Banana	cytosol	37.54	51.79
Zm00001d021400_P001	Maize	cytosol	37.86	51.09
TraesCS5A01G163200.1	Wheat	cytosol	50.7	50.27
TraesCS5B01G160600.1	Wheat	cytosol	50.38	49.95
TraesCS5D01G168200.1	Wheat	cytosol	50.16	49.73
HORVU5Hr1G050890.1	Barley	cytosol	49.95	49.36
Zm00001d024424_P001	Maize	cytosol	38.73	48.45
VIT_11s0118g00490.t01	Wine grape	cytosol	35.28	48.23
Solyc08g029190.2.1	Tomato	nucleus	34.63	47.98
Solyc06g065910.2.1	Tomato	cytosol	35.28	47.74
PGSC0003DMT400038437	Potato	cytosol	34.3	47.6
PGSC0003DMT400049152	Potato	cytosol	34.3	47.6
GSMUA_Achr9P22500_001	Banana	cytosol	35.17	47.31
GSMUA_Achr4P04120_001	Banana	cytosol	26.11	47.27
PGSC0003DMT400067142	Potato	cytosol	34.74	47.01
CDY58928	Canola	cytosol	35.28	46.78
CDX68815	Canola	cytosol, nucleus, plastid	34.41	46.71
CDY11535	Canola	nucleus	35.28	46.32
CDY38510	Canola	nucleus	34.09	45.4
VIT_04s0008g06310.t01	Wine grape	mitochondrion	36.35	44.87
CDX83226	Canola	cytosol	34.3	44.17
CDX75218	Canola	cytosol	34.3	43.86
Bra007805.1-P	Field mustard	nucleus	35.71	43.84
Zm00001d037923_P001	Maize	cytosol	7.66	43.83
CDX72344	Canola	nucleus	33.01	43.59
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	33.87	43.49
Solyc07g007390.2.1	Tomato	nucleus	36.35	43.32
KRH61724	Soybean	cytosol	33.87	43.25
CDY13473	Canola	nucleus	33.66	43.15
KRH37816	Soybean	cytosol	33.98	43.15
KRH20222	Soybean	nucleus	33.66	43.09
AT2G25290.4	Thale cress	cytosol	34.52	42.95
KRH52396	Soybean	cytosol	4.75	42.72
Bra023964.1-P	Field mustard	nucleus	33.33	42.5
AT4G32070.1	Thale cress	nucleus	35.71	42.33
KRH03587	Soybean	nucleus	33.01	42.21
Bra000549.1-P	Field mustard	nucleus	34.74	42.09
PGSC0003DMT400078952	Potato	cytosol	36.25	41.43
CDX70924	Canola	cytosol	25.46	37.05
CDY51850	Canola	cytosol	24.7	36.01
Bra006557.1-P	Field mustard	cytosol	25.03	34.89
KRH05202	Soybean	cytosol	13.05	34.77
Zm00001d039966_P001	Maize	plastid	25.67	30.47
AT5G20360.1	Thale cress	cytosol	25.89	29.67

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103632340	MapMan:20.2.4.5	Gene3D:3.10.20.90	UniProt:A0A1D6HZL1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	ProteinID:ONM53510.1	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005	PFscan:PS50293
PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452
SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000222072F	EnsemblPlantsGene:Zm00001d019666
EnsemblPlants:Zm00001d019666_P001	EnsemblPlants:Zm00001d019666_T001	SEG:seg	:	:	:

Description

Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein

Coordinates

chr7:+:49119150..49122541

Molecular Weight (calculated)

105098.0 Da

IEP (calculated)

6.106

GRAVY (calculated)

-0.772

Length

927 amino acids

Sequence
(BLAST)

001: MGKTPKKKKL SESGSRGSPR TSRCNSRSSQ CSGEQISSHP APAVDEDDAV FIGLASELKE EGTRLFQTRD YEGAAFKFDK AIKLLPQGHN DVAFLHCNIA
101: ACYMHMNPEE YHRAIDECNS ALDASPAYTK ALLKRARCFE ALDRLDLACR DAEKALSLEP NNVTASELYE SIKEVMQMEE DVSSLERQVA SSSVHHEPAA
201: AISSLAKERI QRRVSRKFRN SIVEEEVWEM IQGEEVDDDH GNNDDGQEDH AGSNEDDGDK ERHSGSSNGK HNNSETQEKP CSLLQHRHGH HPEEKETKIF
301: KNAAEQYSKQ CGASATNEAA GQHSPGRRHG QDEHEKHLNE ILVKGIQMPA EKGKHTATTT AQNNQASVVE RRNKKHFEVG SHSRHTTTQE RYERYANASA
401: SLPGKHSLLD EKYMPPERQI TIRTSNYGGA REKHPKLYAG SSSRENHEAA REVVKKKFKF VHGDDIRIVL IPENCSLLQV MDIARYKYNP HLKSFLLKFM
501: DKEGDLVTIT STEDLRWVED LYPQVPVRLH IKEVSPEREI TRDLVMPQQL SCLPEREPNL NHYSAHTTSD EYECGSSRRD DERSHPPCAT DEWMVQFARL
601: FKNHAGFDSD ACVDLRDLGI RLYYEAMEDT ITSEEAQEIF QAAEAKFQEM AALALFNWGN IHMSRARKRL VLSEDTSRES ILAQVKAAYE WACTEYVKAG
701: RKFEDSIDVK PDFYEGLIAL GQQQFEQAKL SWRYADTCKV DMGTEVLELF NHAEDNMEKG MEMWEGIEYL RVKGLSKSRK GKAAAVVDKL VALSEQGKDL
801: SPDEAFEQAS NMRSQLNISW GTILYERSVV EFKLGLSSWE ESLQEAIEKF KTGGASVADI SVMVKNHCVN GNNQEGLSFN IDEIVQAWNE MYDAKKLKNG
901: SSSFRLEPIF RRRPSKLHNI LEHMHCT

Best Arabidopsis Sequence Match ( AT4G32070.1 )
(BLAST)

001: MGKPTAKKKN PETPKDASGG GGGGGGKSGK TYHRSTSRVF DEDMEIFISR ALELKEEGNK LFQKRDHEGA MLSFDKALKL LPKDHIDVAY LRTSMASCYM
101: QMGLGEYPNA ISECNLALEA SPRYSKALVR RSRCYEALNK LDYAFRDARI VLNMEPGNVS ANEIFDRVKK VLVDKGIDVD EMEKDFVDVQ PVCAARLKKI
201: VKERLRKSKK KKKSGGKDEE LKSPKVVVVD KGDEAEGRNK PKEEKSDKSD IDGKIGGKRE EKKTSFKSDK GQKKKSGGNK AGEERKVEDK VVVMDKEVIA
301: SEIVDGGGSK KEGATVTRTI KLVHGDDIRW AQLPLDSTVR LVRDVIRDRF PALRGFLIKY RDTEGDLVTI TTTDELRLAA STHDKLGSLR LYIAEVNPDQ
401: EPTYDGMSNT ESTDKVSKRL SSLADNGSVG EYVGSDKASG CFENWIFQFA QLFKNHVGFD SDSYVDLHDL GMKLYTEAME DAVTGEDAQE LFQIAADKFQ
501: EMGALALLNW GNVHMSKARK QVCIPEDASR EAIIEAVEAA FVWTQNEYNK AAEKYEEAIK VKPDFYEALL ALGQEQFEHA KLCWYHALKS KVDLESEASQ
601: EVLKLYNKAE DSMERGMQIW EEMEECRLNG ISKLDKHKNM LRKLELDELF SEASEEETVE QTANMSSQIN LLWGSLLYER SIVEYKLGLP TWDECLEVAV
701: EKFELAGASA TDIAVMVKNH CSSESALEGM GFKIDEIVQA WNEMYDAKRW QMGVPSFRLE PMFRRRAPKL HDILENVFSG PV

Arabidopsis Description

Phox4Protein PHOX4 [Source:UniProtKB/Swiss-Prot;Acc:F4JTI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.