Factsheet for TraesCS5D01G168200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT4G32070.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT4G32070.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT4G32070.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT4G32070.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT4G32070.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G163200.1	Wheat	cytosol	96.36	96.36
TraesCS5B01G160600.1	Wheat	cytosol	96.15	96.15
HORVU5Hr1G050890.1	Barley	cytosol	79.57	79.32
KRG84467	Soybean	cytosol	8.24	59.23
KRH05201	Soybean	cytosol	17.97	55.81
GSMUA_Achr4P20360_001	Banana	cytosol	38.4	53.58
GSMUA_Achr7P05370_001	Banana	cytosol	37.22	53.37
EER96429	Sorghum	plastid	51.55	51.88
GSMUA_Achr3P00890_001	Banana	cytosol	37.01	51.49
Zm00001d019666_P001	Maize	plastid	49.73	50.16
TraesCS5D01G366100.1	Wheat	cytosol	36.79	49.5
GSMUA_Achr4P04120_001	Banana	cytosol	27.06	49.41
VIT_11s0118g00490.t01	Wine grape	cytosol	35.72	49.26
GSMUA_Achr9P22500_001	Banana	cytosol	36.26	49.2
PGSC0003DMT400038437	Potato	cytosol	34.12	47.75
PGSC0003DMT400049152	Potato	cytosol	34.12	47.75
Solyc08g029190.2.1	Tomato	nucleus	34.12	47.68
Solyc06g065910.2.1	Tomato	cytosol	34.22	46.72
PGSC0003DMT400067142	Potato	cytosol	33.9	46.28
CDX68815	Canola	cytosol, nucleus, plastid	33.26	45.53
CDY38510	Canola	nucleus	33.48	44.97
CDY58928	Canola	cytosol	33.58	44.92
VIT_04s0008g06310.t01	Wine grape	mitochondrion	35.72	44.47
CDY11535	Canola	nucleus	33.48	44.33
KRH37816	Soybean	cytosol	34.33	43.97
KRH61724	Soybean	cytosol	33.8	43.53
KRH20222	Soybean	nucleus	33.58	43.37
CDX75218	Canola	cytosol	33.48	43.17
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	33.16	42.94
CDX83226	Canola	cytosol	33.05	42.92
Solyc07g007390.2.1	Tomato	nucleus	35.62	42.8
Bra000549.1-P	Field mustard	nucleus	34.76	42.48
CDY13473	Canola	nucleus	32.73	42.32
KRH03587	Soybean	nucleus	32.73	42.21
CDX72344	Canola	nucleus	31.66	42.17
AT2G25290.4	Thale cress	cytosol	33.37	41.88
Bra023964.1-P	Field mustard	nucleus	32.41	41.68
Bra007805.1-P	Field mustard	nucleus	33.48	41.46
PGSC0003DMT400078952	Potato	cytosol	35.4	40.81
AT4G32070.1	Thale cress	nucleus	33.8	40.41
CDX70924	Canola	cytosol	24.49	35.95
CDY51850	Canola	cytosol	24.28	35.69
KRH05202	Soybean	cytosol	13.05	35.06
Bra006557.1-P	Field mustard	cytosol	24.81	34.89
KRH52396	Soybean	cytosol	3.74	33.98
TraesCS5D01G165100.1	Wheat	cytosol	13.69	33.25
TraesCS5D01G170500.1	Wheat	nucleus	25.45	30.51
AT5G20360.1	Thale cress	cytosol	25.88	29.91

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452
SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS5D01G168200	EnsemblPlants:TraesCS5D01G168200.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:263154878..263158369

Molecular Weight (calculated)

106581.0 Da

IEP (calculated)

4.839

GRAVY (calculated)

-0.832

Length

935 amino acids

Sequence
(BLAST)

001: MEEMPSEKKQ SESGSINCAP SSSSSQGIPN SLVNKDEDLA IGVVTELKKE GTPIEQKEER ASTAIDLKEE GTATQLKEEG ASKEDEAAVD SKEEGAKTEL
101: EEKMMLSQKR DYEKAIELKG EGTKLFQRRD YEGAALEFDK AIKLLPKGHD DIAFLHCNIA ACYMHMKPES YERAVDECNA ALEASPKYTN ALLKRARCFE
201: ALDRLDLACE DVQKVLNLEP NNVTALELYE SLREEMETEN LLENQVVSPV EPKAGFSKEK IQRKVSRRFR NNSIVEEVWL IHDDDEQEND EDGNEEECSE
301: ENHMENDLSN EGNDTREMPS RHNHDEDKWN TEQNQVKHGQ HKLGADDEGQ RPQHAPRDVE QMHHKETESQ NKHEKPLKEI KVRSGQDQQV MHTKQNQVAD
401: MDVRQKQIED VPTTSRSNQE IHTEMYERFI NGNQARRSLQ RHTSRGGDKQ EKQTSVKVAS PGGDEHQKQK RAYPTDGETK TVKFVMGDDI RIALVPEDCS
501: LRQAINVARC KYSPHLKAML LKFQDIEGDL VTITSTEELR WVEDLKQGPA RLYIKEVSPE REITKDIVMP NISTATLERK HSISECGSAR HPAEDKSSSY
601: ADDWMVQFAR LFKNHVGFDS DALVDLRDLG TRLCIEAMED TITSEEAQEI FHAAEAKFQE MAALALFNWG NIHMSRAKKR LFLSEDASKD SVLSQVKTAY
701: ELACAEYAKA GKKFEDTVDV KPDFYEGLIA LGNQQFEQAK LSWRYADACK VDMRTEVLEL FNRAEDNMEK GMEMWEGIEY LRLKGLSKSK KEKILLDKLG
801: LDGHQKDITA DEAFEQASNM RSQLNISWAT ILYERSVVEF QLGLASWEES LTEAIEKFKT GGASLADISV MIKNHCANEK TQEGLSFKID EIVQAWNEMY
901: DAKKLENGSS SFRLEPLFRR QPSKLHNVLE HIKYT

Best Arabidopsis Sequence Match ( AT4G32070.1 )
(BLAST)

001: MGKPTAKKKN PETPKDASGG GGGGGGKSGK TYHRSTSRVF DEDMEIFISR ALELKEEGNK LFQKRDHEGA MLSFDKALKL LPKDHIDVAY LRTSMASCYM
101: QMGLGEYPNA ISECNLALEA SPRYSKALVR RSRCYEALNK LDYAFRDARI VLNMEPGNVS ANEIFDRVKK VLVDKGIDVD EMEKDFVDVQ PVCAARLKKI
201: VKERLRKSKK KKKSGGKDEE LKSPKVVVVD KGDEAEGRNK PKEEKSDKSD IDGKIGGKRE EKKTSFKSDK GQKKKSGGNK AGEERKVEDK VVVMDKEVIA
301: SEIVDGGGSK KEGATVTRTI KLVHGDDIRW AQLPLDSTVR LVRDVIRDRF PALRGFLIKY RDTEGDLVTI TTTDELRLAA STHDKLGSLR LYIAEVNPDQ
401: EPTYDGMSNT ESTDKVSKRL SSLADNGSVG EYVGSDKASG CFENWIFQFA QLFKNHVGFD SDSYVDLHDL GMKLYTEAME DAVTGEDAQE LFQIAADKFQ
501: EMGALALLNW GNVHMSKARK QVCIPEDASR EAIIEAVEAA FVWTQNEYNK AAEKYEEAIK VKPDFYEALL ALGQEQFEHA KLCWYHALKS KVDLESEASQ
601: EVLKLYNKAE DSMERGMQIW EEMEECRLNG ISKLDKHKNM LRKLELDELF SEASEEETVE QTANMSSQIN LLWGSLLYER SIVEYKLGLP TWDECLEVAV
701: EKFELAGASA TDIAVMVKNH CSSESALEGM GFKIDEIVQA WNEMYDAKRW QMGVPSFRLE PMFRRRAPKL HDILENVFSG PV

Arabidopsis Description

Phox4Protein PHOX4 [Source:UniProtKB/Swiss-Prot;Acc:F4JTI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.