CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	KRG91803	AT4G09570.1	19130088
AT4G32070.1	KRH34983	AT4G09570.1	19130088
AT4G32070.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05202	Soybean	cytosol	52.43	15.52
KRH61724	Soybean	cytosol	76.7	10.88
PGSC0003DMT400038437	Potato	cytosol	63.11	9.73
PGSC0003DMT400049152	Potato	cytosol	63.11	9.73
Solyc08g029190.2.1	Tomato	nucleus	63.11	9.72
Solyc06g065910.2.1	Tomato	cytosol	58.25	8.76
PGSC0003DMT400067142	Potato	cytosol	56.31	8.47
VIT_04s0008g06310.t01	Wine grape	mitochondrion	59.22	8.12
CDX68815	Canola	cytosol, nucleus, plastid	50.49	7.61
GSMUA_Achr4P20360_001	Banana	cytosol	48.54	7.46
GSMUA_Achr3P00890_001	Banana	cytosol	48.54	7.44
CDX75218	Canola	cytosol	51.46	7.31
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	50.49	7.2
CDY58928	Canola	cytosol	48.54	7.15
CDX72344	Canola	nucleus	48.54	7.12
CDY11535	Canola	nucleus	48.54	7.08
GSMUA_Achr7P05370_001	Banana	cytosol	44.66	7.06
KRH20222	Soybean	nucleus	49.51	7.04
CDY13473	Canola	nucleus	48.54	6.92
KRH03587	Soybean	nucleus	48.54	6.9
CDY38510	Canola	nucleus	46.6	6.9
Bra023964.1-P	Field mustard	nucleus	48.54	6.88
CDX83226	Canola	cytosol	46.6	6.67
Bra007805.1-P	Field mustard	nucleus	48.54	6.62
TraesCS5A01G357000.1	Wheat	cytosol	44.66	6.62
KRH37816	Soybean	cytosol	46.6	6.58
Os09t0556200-00	Rice	cytosol, plasma membrane	43.69	6.56
GSMUA_Achr9P22500_001	Banana	cytosol	43.69	6.53
EER97166	Sorghum	cytosol	43.69	6.5
Zm00001d021400_P001	Maize	cytosol	42.72	6.4
AT4G32070.1	Thale cress	nucleus	48.54	6.39
TraesCS5D01G366100.1	Wheat	cytosol	42.72	6.33
HORVU5Hr1G088290.2	Barley	cytosol	42.72	6.31
AT2G25290.4	Thale cress	cytosol	45.63	6.31
Bra000549.1-P	Field mustard	nucleus	46.6	6.27
TraesCS5B01G359500.1	Wheat	cytosol	41.75	6.17
TraesCS5D01G165100.1	Wheat	cytosol	22.33	5.97
HORVU5Hr1G050130.1	Barley	cytosol	22.33	5.79
TraesCS5B01G157700.1	Wheat	cytosol	23.3	5.66
TraesCS5A01G160000.1	Wheat	cytosol	20.39	5.3
Os08t0296900-01	Rice	cytosol	39.81	5.3
Zm00001d024424_P001	Maize	cytosol	35.92	4.99
EER96429	Sorghum	plastid	43.69	4.84
Zm00001d019666_P001	Maize	plastid	42.72	4.75
EES13437	Sorghum	cytosol	33.98	4.71
KRH02008	Soybean	nucleus	32.04	4.25
KRH51148	Soybean	cytosol	31.07	4.16
TraesCS5B01G160600.1	Wheat	cytosol	34.95	3.85
TraesCS5D01G168200.1	Wheat	cytosol	33.98	3.74
TraesCS5A01G163200.1	Wheat	cytosol	33.01	3.64
HORVU5Hr1G050890.1	Barley	cytosol	33.01	3.62
Zm00001d037923_P001	Maize	cytosol	3.88	2.47
KRG84467	Soybean	cytosol	2.91	2.31
KRH05201	Soybean	cytosol	4.85	1.66
GSMUA_Achr4P04120_001	Banana	cytosol	7.77	1.56

Protein Annotations

EMBL:ACUP02003419	EnsemblPlants:KRH52396	EnsemblPlantsGene:GLYMA_06G066100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	PFscan:PS50005	PFscan:PS50293	ProteinID:KRH52396
ProteinID:KRH52396.1	SUPFAM:SSF48452	UniParc:UPI00023C31E9	UniProt:K7KTG5	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr6:+:5045025..5045336

Molecular Weight (calculated)

11701.2 Da

IEP (calculated)

9.727

GRAVY (calculated)

-0.390

Length

103 amino acids

Sequence
(BLAST)

001: MGKPTGKKGT VTPGAAYSHA MPGKSSKAFD EDTAVFMTMS QEFREEGNKL FQKKDHEGAM LKYEKALKLL PNNHIDVAHL RTNMVTCYKW HLYAIFISIV
101: FQF

Best Arabidopsis Sequence Match ( AT2G25290.1 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.