Factsheet for Solyc06g065910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT4G32070.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067142	Potato	cytosol	96.93	96.93
KRG84467	Soybean	cytosol	14.01	73.85
Solyc08g029190.2.1	Tomato	nucleus	70.51	72.2
KRH05201	Soybean	cytosol	28.47	64.78
VIT_04s0008g06310.t01	Wine grape	mitochondrion	64.53	58.85
KRH52396	Soybean	cytosol	8.76	58.25
GSMUA_Achr4P20360_001	Banana	cytosol	56.35	57.61
CDX68815	Canola	cytosol, nucleus, plastid	56.2	56.37
GSMUA_Achr7P05370_001	Banana	cytosol	53.14	55.83
GSMUA_Achr3P00890_001	Banana	cytosol	54.74	55.8
CDY58928	Canola	cytosol	56.79	55.65
KRH61724	Soybean	cytosol	58.39	55.1
CDY11535	Canola	nucleus	56.2	54.53
CDY38510	Canola	nucleus	55.33	54.45
CDX75218	Canola	cytosol	57.23	54.07
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	56.93	54.02
CDX83226	Canola	cytosol	56.5	53.75
Os09t0556200-00	Rice	cytosol, plasma membrane	52.55	52.48
CDX72344	Canola	nucleus	53.72	52.42
AT2G25290.4	Thale cress	cytosol	56.79	52.21
Zm00001d021400_P001	Maize	cytosol	52.12	51.97
Bra007805.1-P	Field mustard	nucleus	57.23	51.92
EER97166	Sorghum	cytosol	52.41	51.88
CDY13473	Canola	nucleus	54.74	51.87
Solyc07g007390.2.1	Tomato	nucleus	58.39	51.41
GSMUA_Achr4P04120_001	Banana	cytosol	38.25	51.17
Bra023964.1-P	Field mustard	nucleus	54.31	51.17
Bra000549.1-P	Field mustard	nucleus	57.08	51.11
AT4G32070.1	Thale cress	nucleus	58.25	51.02
TraesCS5A01G357000.1	Wheat	cytosol	50.95	50.22
TraesCS5D01G366100.1	Wheat	cytosol	50.8	50.07
HORVU5Hr1G088290.2	Barley	cytosol	50.66	49.78
GSMUA_Achr9P22500_001	Banana	cytosol	50.07	49.78
TraesCS5B01G359500.1	Wheat	cytosol	50.51	49.64
KRH05202	Soybean	cytosol	22.19	43.68
Os08t0296900-01	Rice	cytosol	49.2	43.54
EES13437	Sorghum	cytosol	45.55	41.99
Zm00001d024424_P001	Maize	cytosol	45.26	41.84
Zm00001d037923_P001	Maize	cytosol	9.2	38.89
EER96429	Sorghum	plastid	48.18	35.52
Zm00001d019666_P001	Maize	plastid	47.74	35.28
Solyc02g081200.1.1	Tomato	nucleus	38.98	34.32
Solyc02g036360.1.1	Tomato	nucleus	38.1	34.3
TraesCS5A01G163200.1	Wheat	cytosol	46.72	34.22
TraesCS5B01G160600.1	Wheat	cytosol	46.72	34.22
TraesCS5D01G168200.1	Wheat	cytosol	46.72	34.22
HORVU5Hr1G050890.1	Barley	cytosol	45.26	33.05
TraesCS5D01G165100.1	Wheat	cytosol	14.89	26.49
HORVU5Hr1G050130.1	Barley	cytosol	14.89	25.69
TraesCS5A01G160000.1	Wheat	cytosol	14.16	24.49
TraesCS5B01G157700.1	Wheat	cytosol	14.6	23.58

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K4C7L9
InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005	PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904
PANTHER:PTHR22904:SF419	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277	EnsemblPlantsGene:Solyc06g065910.2
EnsemblPlants:Solyc06g065910.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002765B8D	SEG:seg

Description

No Description!

Coordinates

chr6:+:41307528..41309760

Molecular Weight (calculated)

78980.4 Da

IEP (calculated)

5.285

GRAVY (calculated)

-0.577

Length

685 amino acids

Sequence
(BLAST)

001: MGKPTGKKKS NVKSKSNDGN VKHKSKAFDE DTAVFIKMSK ELKEEGNRFF QKRDHEGAML KYEKALKLLP RNHIDVAYLH SNLASCYMQM GRSEFPKAIN
101: ECNLALEVAP KYSKALLKRA KCYESLNRLD LALRDVNHVL SIEPNNLTAL EIADKVKKEI EEILKVENKK LVLPLPVSAN VVKDNMKKEK KNNKFDRKRI
201: VEIKETKIDG VEEKKAEDKV VVEEKRTVQG EKTMIRTVKL VLGEDIRWAQ LPVGCSFRLV RDIVLDRFPN LKGALIKYKD QEGDLVTITT TDELRLAESS
301: VGLQGSLRLY IKEVSPDKEP MYLRVEEDEK SSICRSNIVK KDGELNKGPI CPENWFVQFA RLFKNHVGVD CDSYLDLHET GMKLYSEAME DTVTNEEAEE
401: LFDIASAQFQ EMAALSLFNW GNVHMSRARK EVFFTEEGSG ETVSEQVKSA YEWAEKEYET AEMRYEEALR VKPDFYESLL ALGQQQFEQA KLSWYYLIGS
501: KVELETGTCA EILELYNKAE DSIDRGMEMW EEMEEQHLNG LSKYEEYKSQ LYKRGLEGIL KDKSSEETKE QTENMRSQIY LLWGTMLYER SVVEFKIGLP
601: TWEECLDVAV EKFELAGASH SDIAVMIKNH CSNETALEGF KVDEIVQAWS EMYDTNRWQT GVPTFRLEPL FRRRVSSLHS ILENI

Best Arabidopsis Sequence Match ( AT2G25290.2 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.