CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	KRG91803	AT4G09570.1	19130088
AT4G32070.1	KRH34983	AT4G09570.1	19130088
AT4G32070.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG84467	Soybean	cytosol	26.91	62.31
GSMUA_Achr4P04120_001	Banana	cytosol	52.16	30.66
PGSC0003DMT400038437	Potato	cytosol	64.45	29.04
PGSC0003DMT400049152	Potato	cytosol	64.45	29.04
Solyc08g029190.2.1	Tomato	nucleus	64.12	28.85
KRH61724	Soybean	cytosol	68.77	28.51
Solyc06g065910.2.1	Tomato	cytosol	64.78	28.47
CDX68815	Canola	cytosol, nucleus, plastid	64.12	28.26
CDY58928	Canola	cytosol	65.45	28.18
CDY11535	Canola	nucleus	65.78	28.05
PGSC0003DMT400067142	Potato	cytosol	63.46	27.88
CDY38510	Canola	nucleus	64.12	27.73
GSMUA_Achr4P20360_001	Banana	cytosol	61.46	27.61
VIT_04s0008g06310.t01	Wine grape	mitochondrion	68.44	27.43
GSMUA_Achr7P05370_001	Banana	cytosol	59.14	27.3
GSMUA_Achr3P00890_001	Banana	cytosol	59.14	26.49
CDX75218	Canola	cytosol	63.79	26.48
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	63.46	26.45
CDX83226	Canola	cytosol	63.12	26.39
Bra007805.1-P	Field mustard	nucleus	65.78	26.23
Os09t0556200-00	Rice	cytosol, plasma membrane	59.47	26.09
AT2G25290.4	Thale cress	cytosol	64.12	25.91
Zm00001d021400_P001	Maize	cytosol	58.8	25.76
EER97166	Sorghum	cytosol	59.14	25.72
CDX72344	Canola	nucleus	59.8	25.64
CDY13473	Canola	nucleus	61.13	25.45
Bra023964.1-P	Field mustard	nucleus	61.46	25.45
Bra000549.1-P	Field mustard	nucleus	63.12	24.84
TraesCS5D01G366100.1	Wheat	cytosol	57.14	24.75
TraesCS5A01G357000.1	Wheat	cytosol	57.14	24.75
Zm00001d037923_P001	Maize	cytosol	13.29	24.69
KRH20222	Soybean	nucleus	59.14	24.59
TraesCS5B01G359500.1	Wheat	cytosol	56.81	24.53
HORVU5Hr1G088290.2	Barley	cytosol	56.81	24.53
AT4G32070.1	Thale cress	nucleus	62.79	24.17
KRH03587	Soybean	nucleus	58.14	24.14
KRH37816	Soybean	cytosol	58.47	24.11
GSMUA_Achr9P22500_001	Banana	cytosol	52.16	22.79
Os08t0296900-01	Rice	cytosol	58.14	22.61
EES13437	Sorghum	cytosol	55.48	22.48
Zm00001d024424_P001	Maize	cytosol	53.82	21.86
TraesCS5B01G160600.1	Wheat	cytosol	56.48	18.18
EER96429	Sorghum	plastid	55.81	18.08
TraesCS5A01G163200.1	Wheat	cytosol	56.15	18.07
TraesCS5D01G168200.1	Wheat	cytosol	55.81	17.97
HORVU5Hr1G050890.1	Barley	cytosol	55.81	17.91
Zm00001d019666_P001	Maize	plastid	55.15	17.91
KRH02008	Soybean	nucleus	40.2	15.59
KRH51148	Soybean	cytosol	39.2	15.34
TraesCS5A01G160000.1	Wheat	cytosol	7.97	6.06
TraesCS5B01G157700.1	Wheat	cytosol	7.31	5.19
KRH52396	Soybean	cytosol	1.66	4.85
TraesCS5D01G165100.1	Wheat	cytosol	2.33	1.82
HORVU5Hr1G050130.1	Barley	cytosol	1.33	1.01
KRH05202	Soybean	cytosol	1.0	0.86

Protein Annotations

EMBL:ACUP02010703	EnsemblPlants:KRH05201	EnsemblPlantsGene:GLYMA_17G2135002	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	ProteinID:KRH05201	ProteinID:KRH05201.1	UniParc:UPI0006EDB4C5	UniProt:A0A0R0FGE1
MapMan:20.2.4.5	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:35735662..35736787

Molecular Weight (calculated)

34713.3 Da

IEP (calculated)

4.564

GRAVY (calculated)

-0.382

Length

301 amino acids

Sequence
(BLAST)

001: GCGVGEGLST MEDWLVQFAR LFKNHVGFDS DAYLDIHGIG MKLYSEAMED AVTSENAQEL FDIAADRFQE MAALALFNWG SVHMSRARKM VSIPDDGSRE
101: SSFEFVKVGY EWALKEYMNA EKRFEEAVKI KSDFYEGLLA LGHQQFEQAR LCWSYLIAKN KGLETSSSDE VLQFYNKAED SMEKGMLMWE EIEERRLNEL
201: SKSDKYKEQL EKMYKLGLLA MPRTVFAVEK FELAGASTTD IGVMIKNHCS NETTMEGFKI DEIVQASNEM YDGWQFDVPS IRLEPLFRRR VPTLHYILEQ
301: F

Best Arabidopsis Sequence Match ( AT2G25290.1 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.