Factsheet for Solyc08g029190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT4G32070.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038437	Potato	cytosol	90.88	91.02
PGSC0003DMT400049152	Potato	cytosol	90.88	91.02
KRG84467	Soybean	cytosol	14.65	75.38
Solyc06g065910.2.1	Tomato	cytosol	72.2	70.51
KRH05201	Soybean	cytosol	28.85	64.12
KRH52396	Soybean	cytosol	9.72	63.11
VIT_04s0008g06310.t01	Wine grape	mitochondrion	68.01	60.59
CDX68815	Canola	cytosol, nucleus, plastid	58.15	56.95
KRH61724	Soybean	cytosol	61.58	56.75
GSMUA_Achr4P20360_001	Banana	cytosol	56.5	56.42
GSMUA_Achr3P00890_001	Banana	cytosol	55.9	55.65
CDY58928	Canola	cytosol	58.15	55.65
GSMUA_Achr7P05370_001	Banana	cytosol	53.21	54.6
CDY38510	Canola	nucleus	56.8	54.6
CDY11535	Canola	nucleus	57.55	54.53
Os09t0556200-00	Rice	cytosol, plasma membrane	55.75	54.37
CDX75218	Canola	cytosol	58.45	53.93
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	58.15	53.88
Zm00001d021400_P001	Maize	cytosol	54.56	53.13
CDX83226	Canola	cytosol	56.95	52.92
EER97166	Sorghum	cytosol	54.71	52.89
CDX72344	Canola	nucleus	55.16	52.56
CDY13473	Canola	nucleus	56.65	52.42
Bra023964.1-P	Field mustard	nucleus	56.8	52.27
AT2G25290.4	Thale cress	cytosol	57.55	51.68
Solyc07g007390.2.1	Tomato	nucleus	59.94	51.54
Bra007805.1-P	Field mustard	nucleus	58.0	51.39
Bra000549.1-P	Field mustard	nucleus	58.3	50.98
TraesCS5A01G357000.1	Wheat	cytosol	52.91	50.94
TraesCS5D01G366100.1	Wheat	cytosol	52.91	50.94
AT4G32070.1	Thale cress	nucleus	59.34	50.77
HORVU5Hr1G088290.2	Barley	cytosol	52.77	50.65
TraesCS5B01G359500.1	Wheat	cytosol	52.77	50.65
GSMUA_Achr9P22500_001	Banana	cytosol	51.87	50.36
GSMUA_Achr4P04120_001	Banana	cytosol	38.27	50.0
KRH05202	Soybean	cytosol	23.62	45.4
EES13437	Sorghum	cytosol	47.68	42.93
Os08t0296900-01	Rice	cytosol	49.63	42.89
Zm00001d024424_P001	Maize	cytosol	46.64	42.11
Zm00001d037923_P001	Maize	cytosol	9.72	40.12
EER96429	Sorghum	plastid	48.58	34.98
Solyc02g036360.1.1	Tomato	nucleus	39.76	34.95
Solyc02g081200.1.1	Tomato	nucleus	40.51	34.83
Zm00001d019666_P001	Maize	plastid	47.98	34.63
TraesCS5B01G160600.1	Wheat	cytosol	47.98	34.33
TraesCS5D01G168200.1	Wheat	cytosol	47.68	34.12
TraesCS5A01G163200.1	Wheat	cytosol	47.53	34.01
HORVU5Hr1G050890.1	Barley	cytosol	46.19	32.94
TraesCS5D01G165100.1	Wheat	cytosol	14.2	24.68
TraesCS5A01G160000.1	Wheat	cytosol	14.2	23.99
HORVU5Hr1G050130.1	Barley	cytosol	14.05	23.68
TraesCS5B01G157700.1	Wheat	cytosol	14.8	23.35

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K4CJY1	InterPro:PB1_dom	PFAM:PF00564
PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00028	SMART:SM00666
SUPFAM:SSF48452	SUPFAM:SSF54277	EnsemblPlantsGene:Solyc08g029190.2	EnsemblPlants:Solyc08g029190.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI000276BE96	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:37974622..37977018

Molecular Weight (calculated)

76513.6 Da

IEP (calculated)

5.124

GRAVY (calculated)

-0.465

Length

669 amino acids

Sequence
(BLAST)

001: MGKPTGKKKT QLISANVKHG TSKAFDEDTA VFITMSQELK EEGNKLFQKH DHEGSMLKYE KALNLLPPNH IDVAYLHTNM AACYMQIGLG DYPRAITECN
101: LALQVAPKYT KALLKRAKCY QSLNRLKLAL RDVNLVLSIE PNNLTALDIA GALEQKGVKI EESEVVVEPP VSTKVVVKSK KKKSNKFDRK KVEEKVVVEE
201: KKSVKEEKIV TRTVKLVFEE DIRWAQLPVD CSIRLVRDIV LDRFPNLKGA LIKYRDQEGD LVTITTTDEL RLVESSAAPQ TSLRLYVVQV SPDKEPVYEG
301: MSGDEDMNSS SYKSTILTDD GHLEKERQSN KGTTCVEDWI IQFARLFKNH VGFDCDPYLD LHEIGMKLYC ETMEDTVTGE EAQELFGIAA AKFQEMAALS
401: LFNWGNVHMS RARKRVYFTE DSSRESMLKQ VKSAYDWAEK EYEMAGRRYG EALRLKPDFY EGLLALGQQQ FEHAKLSWYY LIGSKVELET GTCAEILELY
501: NKAEDSMERG TEMWEEMEEQ RLNGLSKNDE YKALLQKMGL DGLLKDESAE ETEEQAANMR SQIYLLWGTM LYERSVVEFK LGLPTWEECL EVAMEKFELA
601: GASQIDIAVM IKNHCSNETA LEGFKVDEIV QAWKEMYDTN RWQTGVPAFR LESLFRRRVS NLHTVLESF

Best Arabidopsis Sequence Match ( AT4G32070.1 )
(BLAST)

001: MGKPTAKKKN PETPKDASGG GGGGGGKSGK TYHRSTSRVF DEDMEIFISR ALELKEEGNK LFQKRDHEGA MLSFDKALKL LPKDHIDVAY LRTSMASCYM
101: QMGLGEYPNA ISECNLALEA SPRYSKALVR RSRCYEALNK LDYAFRDARI VLNMEPGNVS ANEIFDRVKK VLVDKGIDVD EMEKDFVDVQ PVCAARLKKI
201: VKERLRKSKK KKKSGGKDEE LKSPKVVVVD KGDEAEGRNK PKEEKSDKSD IDGKIGGKRE EKKTSFKSDK GQKKKSGGNK AGEERKVEDK VVVMDKEVIA
301: SEIVDGGGSK KEGATVTRTI KLVHGDDIRW AQLPLDSTVR LVRDVIRDRF PALRGFLIKY RDTEGDLVTI TTTDELRLAA STHDKLGSLR LYIAEVNPDQ
401: EPTYDGMSNT ESTDKVSKRL SSLADNGSVG EYVGSDKASG CFENWIFQFA QLFKNHVGFD SDSYVDLHDL GMKLYTEAME DAVTGEDAQE LFQIAADKFQ
501: EMGALALLNW GNVHMSKARK QVCIPEDASR EAIIEAVEAA FVWTQNEYNK AAEKYEEAIK VKPDFYEALL ALGQEQFEHA KLCWYHALKS KVDLESEASQ
601: EVLKLYNKAE DSMERGMQIW EEMEECRLNG ISKLDKHKNM LRKLELDELF SEASEEETVE QTANMSSQIN LLWGSLLYER SIVEYKLGLP TWDECLEVAV
701: EKFELAGASA TDIAVMVKNH CSSESALEGM GFKIDEIVQA WNEMYDAKRW QMGVPSFRLE PMFRRRAPKL HDILENVFSG PV

Arabidopsis Description

Phox4Protein PHOX4 [Source:UniProtKB/Swiss-Prot;Acc:F4JTI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.