Factsheet for Zm00001d021400_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT4G32070.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT4G32070.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97166	Sorghum	cytosol	94.61	93.93
Os09t0556200-00	Rice	cytosol, plasma membrane	86.17	86.3
TraesCS5A01G357000.1	Wheat	cytosol	81.08	80.14
TraesCS5D01G366100.1	Wheat	cytosol	80.79	79.86
HORVU5Hr1G088290.2	Barley	cytosol	80.79	79.63
TraesCS5B01G359500.1	Wheat	cytosol	80.35	79.2
KRG84467	Soybean	cytosol	12.81	67.69
GSMUA_Achr4P20360_001	Banana	cytosol	61.72	63.28
GSMUA_Achr3P00890_001	Banana	cytosol	59.97	61.31
Zm00001d037923_P001	Maize	cytosol	14.41	61.11
GSMUA_Achr7P05370_001	Banana	cytosol	56.91	59.97
GSMUA_Achr4P04120_001	Banana	cytosol	43.96	58.98
KRH05201	Soybean	cytosol	25.76	58.8
VIT_11s0118g00490.t01	Wine grape	cytosol	55.31	56.05
GSMUA_Achr9P22500_001	Banana	cytosol	55.17	55.01
Solyc08g029190.2.1	Tomato	nucleus	53.13	54.56
PGSC0003DMT400049152	Potato	cytosol	52.98	54.49
PGSC0003DMT400038437	Potato	cytosol	52.98	54.49
Solyc06g065910.2.1	Tomato	cytosol	51.97	52.12
PGSC0003DMT400067142	Potato	cytosol	51.09	51.24
VIT_04s0008g06310.t01	Wine grape	mitochondrion	55.9	51.13
CDX68815	Canola	cytosol, nucleus, plastid	50.36	50.66
CDY38510	Canola	nucleus	50.51	49.86
KRH61724	Soybean	cytosol	52.11	49.31
CDY11535	Canola	nucleus	50.51	49.15
CDY58928	Canola	cytosol	49.93	49.07
CDX75218	Canola	cytosol	51.24	48.55
CDX83226	Canola	cytosol	50.66	48.33
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	50.51	48.06
KRH37816	Soybean	cytosol	50.95	47.95
Solyc07g007390.2.1	Tomato	nucleus	54.15	47.81
Zm00001d024424_P001	Maize	cytosol	51.09	47.37
KRH20222	Soybean	nucleus	49.78	47.24
AT2G25290.4	Thale cress	cytosol	51.09	47.11
KRH03587	Soybean	nucleus	49.49	46.9
CDY13473	Canola	nucleus	49.05	46.61
CDX72344	Canola	nucleus	47.45	46.44
Bra007805.1-P	Field mustard	nucleus	50.95	46.36
Bra023964.1-P	Field mustard	nucleus	48.62	45.94
Bra000549.1-P	Field mustard	nucleus	51.09	45.88
PGSC0003DMT400078952	Potato	cytosol	53.57	45.38
AT4G32070.1	Thale cress	nucleus	49.78	43.73
KRH52396	Soybean	cytosol	6.4	42.72
KRH05202	Soybean	cytosol	20.67	40.8
CDY51850	Canola	cytosol	35.52	38.36
Zm00001d019666_P001	Maize	plastid	51.09	37.86
CDX70924	Canola	cytosol	34.93	37.68
Bra006557.1-P	Field mustard	cytosol	36.24	37.44
Zm00001d039966_P001	Maize	plastid	36.83	32.39
AT5G20360.1	Thale cress	cytosol	37.41	31.77

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	UniProt:A0A1D6IAN8	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	ProteinID:ONM57038.1
ProteinID:ONM57039.1	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005	PFscan:PS50293	PFscan:PS51745
PANTHER:PTHR22904	PANTHER:PTHR22904:SF429	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00022192CC	EnsemblPlantsGene:Zm00001d021400	EnsemblPlants:Zm00001d021400_P001
EnsemblPlants:Zm00001d021400_T001	SEG:seg	:	:	:	:

Description

Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein

Coordinates

chr7:-:151056579..151061402

Molecular Weight (calculated)

77950.3 Da

IEP (calculated)

4.972

GRAVY (calculated)

-0.560

Length

687 amino acids

Sequence
(BLAST)

001: MGKPSLKKKR ASGGGKSGDH GGKPASLERS GSKVLDGDET LFTDMAQEHK EEGNKLFQRR DYDRALLNYD KAIKLLPRAH PDVAYLHSNI AACYMQMSPP
101: DYYRAINECN IALEASPKYT KALLKRARCF EALGRLDLAC RDVNKVLALE PNNLTALDVS DRIKKTMEEK GIVLDDKEIM PTPEEVVAAA PKQKPRKKRG
201: GRKFAAKAAA AAVEEVDEQK IAEAIKEEVE EQPRQVKLVF GEDIRWAQVP ASCSMAQLRE AVRSKFPGLK AVLVKYKDKE GDLVTITNQD ELKWAEELAE
301: AGSSLRLYVT EADPEHEPYV DDTNMERNVN SNSDNGSIRS NRQDEDRSTV TCIDDWIVQF ARLFKNHVGI SSDEYLDLHE VSMKLYTEAI EDTITTEEAQ
401: EVFHLAEGNF QEMAALAFFH WGNVHMSRAR KRLLLSGDSP SELVLEQVKE AYEWARDEYN KAGTRYEDAV KAKPDFFEGF LALAHQQFEQ AKLSWYYAIG
501: SNADLDSCSS EILELFNKAE DNIEKGIEMW EEMEEQRLKN RSKPSQENIV LEKMGLEEYI KDVSTDDAAE QASNLRSQIN ILWGMLLYER SVVEFKLGLP
601: MWEDCLMAAI EKFKLGGASA TDIAVLVKNH CANETAQDGL GFKIDEIVQA WNEMYDIKRW LRGVPSFRLE PLFRRRVPQL HTALEHI

Best Arabidopsis Sequence Match ( AT2G25290.2 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.