Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G088290.2 | Barley | cytosol | 97.27 | 96.99 |
| TraesCS5D01G366100.1 | Wheat | cytosol | 95.68 | 95.68 |
| TraesCS5B01G359500.1 | Wheat | cytosol | 95.83 | 95.55 |
| Os09t0556200-00 | Rice | cytosol, plasma membrane | 83.17 | 84.26 |
| EER97166 | Sorghum | cytosol | 80.86 | 81.21 |
| Zm00001d021400_P001 | Maize | cytosol | 80.14 | 81.08 |
| KRG84467 | Soybean | cytosol | 11.94 | 63.85 |
| GSMUA_Achr4P20360_001 | Banana | cytosol | 60.29 | 62.54 |
| GSMUA_Achr7P05370_001 | Banana | cytosol | 56.26 | 59.97 |
| GSMUA_Achr4P04120_001 | Banana | cytosol | 44.17 | 59.96 |
| GSMUA_Achr3P00890_001 | Banana | cytosol | 57.27 | 59.23 |
| Zm00001d037923_P001 | Maize | cytosol | 13.67 | 58.64 |
| KRH05201 | Soybean | cytosol | 24.75 | 57.14 |
| VIT_11s0118g00490.t01 | Wine grape | cytosol | 53.24 | 54.57 |
| GSMUA_Achr9P22500_001 | Banana | cytosol | 54.1 | 54.57 |
| Solyc08g029190.2.1 | Tomato | nucleus | 50.94 | 52.91 |
| PGSC0003DMT400038437 | Potato | cytosol | 50.65 | 52.69 |
| PGSC0003DMT400049152 | Potato | cytosol | 50.65 | 52.69 |
| Solyc06g065910.2.1 | Tomato | cytosol | 50.22 | 50.95 |
| PGSC0003DMT400067142 | Potato | cytosol | 49.35 | 50.07 |
| CDX68815 | Canola | cytosol, nucleus, plastid | 48.35 | 49.19 |
| VIT_04s0008g06310.t01 | Wine grape | mitochondrion | 52.66 | 48.73 |
| CDY58928 | Canola | cytosol | 48.78 | 48.5 |
| KRH61724 | Soybean | cytosol | 50.36 | 48.21 |
| CDY11535 | Canola | nucleus | 48.78 | 48.02 |
| CDY38510 | Canola | nucleus | 47.77 | 47.7 |
| CDX75218 | Canola | cytosol | 49.64 | 47.59 |
| KRH20222 | Soybean | nucleus | 49.35 | 47.38 |
| KRH37816 | Soybean | cytosol | 49.64 | 47.26 |
| Solyc07g007390.2.1 | Tomato | nucleus | 52.81 | 47.17 |
| Bra011320.1-P | Field mustard | cytosol, nucleus, plastid | 48.92 | 47.09 |
| AT2G25290.4 | Thale cress | cytosol | 49.93 | 46.58 |
| CDX83226 | Canola | cytosol | 48.2 | 46.53 |
| KRH03587 | Soybean | nucleus | 48.35 | 46.34 |
| CDY13473 | Canola | nucleus | 47.77 | 45.92 |
| Bra007805.1-P | Field mustard | nucleus | 49.5 | 45.56 |
| Bra023964.1-P | Field mustard | nucleus | 47.63 | 45.53 |
| CDX72344 | Canola | nucleus | 45.9 | 45.44 |
| PGSC0003DMT400078952 | Potato | cytosol | 52.37 | 44.88 |
| KRH52396 | Soybean | cytosol | 6.62 | 44.66 |
| Bra000549.1-P | Field mustard | nucleus | 48.92 | 44.44 |
| AT4G32070.1 | Thale cress | nucleus | 47.91 | 42.58 |
| KRH05202 | Soybean | cytosol | 20.14 | 40.23 |
| CDY51850 | Canola | cytosol | 34.96 | 38.21 |
| Bra006557.1-P | Field mustard | cytosol | 35.25 | 36.84 |
| TraesCS5A01G163200.1 | Wheat | cytosol | 49.35 | 36.68 |
| CDX70924 | Canola | cytosol | 33.53 | 36.58 |
| TraesCS5A01G164700.1 | Wheat | nucleus, plastid | 36.26 | 32.18 |
| AT5G20360.1 | Thale cress | cytosol | 35.68 | 30.66 |
| TraesCS5A01G160000.1 | Wheat | cytosol | 13.81 | 24.24 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:20.2.4.5 | Gene3D:3.10.20.90 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR000270 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | InterPro:PB1_dom |
| PFAM:PF00564 | PFscan:PS50005 | PFscan:PS50293 | PFscan:PS51745 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF429 |
| SMART:SM00028 | SMART:SM00666 | SUPFAM:SSF48452 | SUPFAM:SSF54277 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| InterPro:TPR_repeat | EnsemblPlantsGene:TraesCS5A01G357000 | EnsemblPlants:TraesCS5A01G357000.1 | TIGR:cd05992 | SEG:seg | : |
Description
No Description!
Coordinates
chr5A:+:559069967..559072598
Molecular Weight (calculated)
78359.6 Da
IEP (calculated)
5.096
GRAVY (calculated)
-0.593
Length
695 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKPSLKKKR ASSGKAGGGD HHGAAKPGAL DRSGSKVLDG DETIFAEMAQ ELREEGNKLF QRRDYERALL NYEKAVKLLP ASAALDAAYL HSNLAACYMQ
101: MSPPDHYRAI NECNLALDAS PKYSKALLKR ARCFEALGRL DLAARDVDRV LAAEPGNLTA LDVADRVRRT MEEKGFVVDG EAVMPTPEEV VAAAPKQQPK
201: PRKKKGRKAS AKAAAAAVEE QGEEKAAEPV KEAEEPPRQV KLVFGEDIRW AQVPATCSMA QLREAVRGKF PGLKAVLVKY KDREGDLVTI TNQDELKWAE
301: DLTEPGSSLR LYVTEADPEH EPYVEDTSSN PLDRNTHNAS DNGSIRSNRQ DEDRSTVTYI DDWIVQFARL FKNHVGVSSD EYLDLHEVSM KLYTDAIEDT
401: ITTDEAQEVF QLAEGNFQEM AALAFFHWGN VHMSRARKRL LLPEDSPKEL VLEKVKEAYE WAKEEYKKAG KTYEEAVRAK PDFFEGFLAL AHQQFEQAKL
501: SWYYAIGTNA DLDTWPSSEV LELFNRAEDN MEKGTEMWEE MEEKRLKNRS KPNLENAVLE KMGMEEYIKD VSTDDAAERA SNMRSQINIL WGMLLYERSV
601: VEFKLGLPAW EDCLMAAIEK FKLGGASATN IAVLVKNHCA NETAQDGLGF NVDEIVQAWN EMYDIKRWLR GAPSFRLEPL FRRRTPQLHM ALEHI
101: MSPPDHYRAI NECNLALDAS PKYSKALLKR ARCFEALGRL DLAARDVDRV LAAEPGNLTA LDVADRVRRT MEEKGFVVDG EAVMPTPEEV VAAAPKQQPK
201: PRKKKGRKAS AKAAAAAVEE QGEEKAAEPV KEAEEPPRQV KLVFGEDIRW AQVPATCSMA QLREAVRGKF PGLKAVLVKY KDREGDLVTI TNQDELKWAE
301: DLTEPGSSLR LYVTEADPEH EPYVEDTSSN PLDRNTHNAS DNGSIRSNRQ DEDRSTVTYI DDWIVQFARL FKNHVGVSSD EYLDLHEVSM KLYTDAIEDT
401: ITTDEAQEVF QLAEGNFQEM AALAFFHWGN VHMSRARKRL LLPEDSPKEL VLEKVKEAYE WAKEEYKKAG KTYEEAVRAK PDFFEGFLAL AHQQFEQAKL
501: SWYYAIGTNA DLDTWPSSEV LELFNRAEDN MEKGTEMWEE MEEKRLKNRS KPNLENAVLE KMGMEEYIKD VSTDDAAERA SNMRSQINIL WGMLLYERSV
601: VEFKLGLPAW EDCLMAAIEK FKLGGASATN IAVLVKNHCA NETAQDGLGF NVDEIVQAWN EMYDIKRWLR GAPSFRLEPL FRRRTPQLHM ALEHI
001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ
Arabidopsis Description
Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.