CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	KRG91803	AT4G09570.1	19130088
AT4G32070.1	KRH34983	AT4G09570.1	19130088
AT4G32070.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52396	Soybean	cytosol	15.52	52.43
HORVU5Hr1G050130.1	Barley	cytosol	29.02	25.44
TraesCS5D01G165100.1	Wheat	cytosol	27.87	25.19
KRH61724	Soybean	cytosol	49.43	23.69
Solyc08g029190.2.1	Tomato	nucleus	45.4	23.62
PGSC0003DMT400049152	Potato	cytosol	44.54	23.2
PGSC0003DMT400038437	Potato	cytosol	44.54	23.2
PGSC0003DMT400067142	Potato	cytosol	43.97	22.34
Solyc06g065910.2.1	Tomato	cytosol	43.68	22.19
CDX68815	Canola	cytosol, nucleus, plastid	42.82	21.82
CDX75218	Canola	cytosol	44.54	21.38
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	44.25	21.33
CDY38510	Canola	nucleus	42.53	21.26
CDX72344	Canola	nucleus	42.82	21.23
CDY13473	Canola	nucleus	43.97	21.16
VIT_04s0008g06310.t01	Wine grape	mitochondrion	45.4	21.04
Bra023964.1-P	Field mustard	nucleus	43.68	20.91
Zm00001d021400_P001	Maize	cytosol	40.8	20.67
CDY11535	Canola	nucleus	41.67	20.54
AT2G25290.4	Thale cress	cytosol	43.97	20.54
EER97166	Sorghum	cytosol	40.52	20.38
CDY58928	Canola	cytosol	40.8	20.31
TraesCS5A01G357000.1	Wheat	cytosol	40.23	20.14
CDX83226	Canola	cytosol	41.67	20.14
KRH03587	Soybean	nucleus	41.95	20.14
KRH20222	Soybean	nucleus	41.67	20.03
KRH37816	Soybean	cytosol	41.95	20.0
Bra000549.1-P	Field mustard	nucleus	43.97	20.0
Os09t0556200-00	Rice	cytosol, plasma membrane	39.37	19.97
HORVU5Hr1G088290.2	Barley	cytosol	39.94	19.94
TraesCS5B01G157700.1	Wheat	cytosol	24.14	19.81
GSMUA_Achr3P00890_001	Banana	cytosol	38.22	19.79
TraesCS5D01G366100.1	Wheat	cytosol	39.37	19.71
GSMUA_Achr4P20360_001	Banana	cytosol	37.93	19.7
AT4G32070.1	Thale cress	nucleus	44.25	19.69
TraesCS5B01G359500.1	Wheat	cytosol	38.79	19.37
Bra007805.1-P	Field mustard	nucleus	41.67	19.21
TraesCS5A01G160000.1	Wheat	cytosol	21.55	18.94
GSMUA_Achr7P05370_001	Banana	cytosol	35.06	18.71
GSMUA_Achr9P22500_001	Banana	cytosol	36.49	18.43
Os08t0296900-01	Rice	cytosol	33.62	15.12
Zm00001d024424_P001	Maize	cytosol	31.61	14.84
EES13437	Sorghum	cytosol	31.03	14.54
KRH51148	Soybean	cytosol	30.75	13.91
KRH02008	Soybean	nucleus	30.46	13.66
Zm00001d019666_P001	Maize	plastid	34.77	13.05
TraesCS5D01G168200.1	Wheat	cytosol	35.06	13.05
TraesCS5B01G160600.1	Wheat	cytosol	34.48	12.83
TraesCS5A01G163200.1	Wheat	cytosol	34.48	12.83
EER96429	Sorghum	plastid	34.2	12.81
HORVU5Hr1G050890.1	Barley	cytosol	32.76	12.15
GSMUA_Achr4P04120_001	Banana	cytosol	12.07	8.2
KRG84467	Soybean	cytosol	0.57	1.54
Zm00001d037923_P001	Maize	cytosol	0.57	1.23
KRH05201	Soybean	cytosol	0.86	1.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	UniProt:A0A0R0FP92	EMBL:ACUP02010704	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G2135001
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	EnsemblPlants:KRH05202	ProteinID:KRH05202	ProteinID:KRH05202.1	InterPro:PB1_dom	PFAM:PF00564
PFscan:PS50005	PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00666
SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0006EE086C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:35737169..35738248

Molecular Weight (calculated)

39566.1 Da

IEP (calculated)

9.862

GRAVY (calculated)

-0.708

Length

348 amino acids

Sequence
(BLAST)

001: MGGSRQGKKK CPSTPSEGQR PPPSPTVPFK NHGEDNNNNK RVAVVAVSSS ALDDDTAMFI NMSQELREEG NRLFQKKDHE GAMLKYEKAL KLLPKSHIDV
101: AHLHTSMAVR YMQLGVGEYP RAISECNMAL QVSPRYTKAL LKRVKCYEAL NRVDLAMRDV RVVLNLEPNN SMALEVLDSL RMTMEEKGIV VDETEIALAA
201: LKIVREKIKN KKEHTGGEDE GKAKKVIIEE KVKVENVEKK DNYKDKDHKF HKDHKDKEKK VVKKVKENEK LGEKDKEKGV VTRTVKLIHG EDIRWAQLPV
301: NCGMRLVRDV IRDRFPGLKG VLVKYRDREG DLVTITNIAE LRLAETCH

Best Arabidopsis Sequence Match ( AT2G25290.1 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.