Factsheet for TraesCS5B01G157700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT4G32070.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT4G32070.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT4G32070.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT4G32070.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT4G32070.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G160000.1	Wheat	cytosol	68.16	72.98
TraesCS5D01G165100.1	Wheat	cytosol	43.16	47.53
HORVU5Hr1G050130.1	Barley	cytosol	39.15	41.81
KRH05202	Soybean	cytosol	19.81	24.14
KRH52396	Soybean	cytosol	5.66	23.3
GSMUA_Achr4P20360_001	Banana	cytosol	25.0	15.82
GSMUA_Achr3P00890_001	Banana	cytosol	25.0	15.77
GSMUA_Achr7P05370_001	Banana	cytosol	24.06	15.64
TraesCS5B01G359500.1	Wheat	cytosol	25.24	15.35
GSMUA_Achr9P22500_001	Banana	cytosol	24.29	14.95
CDX70924	Canola	cytosol	22.41	14.91
VIT_11s0118g00490.t01	Wine grape	cytosol	23.82	14.9
PGSC0003DMT400049152	Potato	cytosol	23.35	14.82
PGSC0003DMT400038437	Potato	cytosol	23.35	14.82
Solyc08g029190.2.1	Tomato	nucleus	23.35	14.8
CDY51850	Canola	cytosol	22.17	14.78
PGSC0003DMT400067142	Potato	cytosol	23.82	14.74
Solyc06g065910.2.1	Tomato	cytosol	23.58	14.6
Bra006557.1-P	Field mustard	cytosol	22.64	14.44
KRH37816	Soybean	cytosol	24.06	13.97
VIT_04s0008g06310.t01	Wine grape	mitochondrion	24.53	13.85
KRH61724	Soybean	cytosol	23.58	13.77
CDX68815	Canola	cytosol, nucleus, plastid	22.17	13.76
CDY38510	Canola	nucleus	22.41	13.65
Solyc07g007390.2.1	Tomato	nucleus	24.53	13.37
KRH03587	Soybean	nucleus	22.64	13.24
Zm00001d024424_P001	Maize	cytosol	23.11	13.23
CDY11535	Canola	nucleus	21.93	13.17
CDY58928	Canola	cytosol	21.7	13.16
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	22.41	13.16
CDY13473	Canola	nucleus	22.41	13.14
CDX72344	Canola	nucleus	21.7	13.11
Bra023964.1-P	Field mustard	nucleus	22.41	13.07
Os08t0296900-01	Rice	cytosol	23.82	13.05
TraesCS5B01G160600.1	Wheat	cytosol	28.77	13.05
AT2G25290.4	Thale cress	cytosol	22.88	13.02
KRH20222	Soybean	nucleus	22.17	12.98
PGSC0003DMT400078952	Potato	cytosol	24.76	12.95
CDX75218	Canola	cytosol	21.93	12.83
EES13437	Sorghum	cytosol	21.93	12.52
CDX83226	Canola	cytosol	21.23	12.5
Bra000549.1-P	Field mustard	nucleus	22.17	12.29
AT4G32070.1	Thale cress	nucleus	22.41	12.15
Bra007805.1-P	Field mustard	nucleus	21.23	11.92
TraesCS5B01G163300.1	Wheat	nucleus, plastid	20.99	11.34
AT5G20360.1	Thale cress	cytosol	21.46	11.25
GSMUA_Achr4P04120_001	Banana	cytosol	9.43	7.81
KRH05201	Soybean	cytosol	5.19	7.31
KRG84467	Soybean	cytosol	0.71	2.31

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS5B01G157700	EnsemblPlants:TraesCS5B01G157700.1
TIGR:cd05992	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:290810897..290812171

Molecular Weight (calculated)

47087.9 Da

IEP (calculated)

4.132

GRAVY (calculated)

-0.730

Length

424 amino acids

Sequence
(BLAST)

001: MSSEQEHPET SELEEEVEKD EDAAIVELVT ELKQEHPETS ELEEEVEKDE DAAIVELVTE LKQEGTTLFR LRDYDGAAFK FDEAIRLSPR APRAYNENDI
101: ASLHSNVAAC YMHMNAHRPE DDYHYHQAID RCNMALDASP RYTKALLKRA RCFEALDRLD LACVDVQEVL TLEPNNAVAL ELLESLREEM EEKKFLLEQE
201: ARSLDDLIKV ISASEKVAKQ FSCTIATAAA DPTKKAVSTE ADGHDMEGIL IPGDGEQDDE QASYDDNDGE EAPSGQTEEA HVDVGDQSGQ HKQEDGGNAE
301: HHAGAENSAG SGATRCVEFV LGEEGDVRRI ALLPQDGGLA QLMDIARSKF PDLKELSVNF KDDRGDLVTV DSTTDQSAWF DEANSRSQGP LRLYVTEGNR
401: ERVSCPDQPI REHDSVDPCL SHDK

Best Arabidopsis Sequence Match ( AT2G25290.1 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.