CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03587	Soybean	nucleus	87.29	87.17
KRH37816	Soybean	cytosol	72.65	72.05
KRG84467	Soybean	cytosol	12.43	69.23
VIT_11s0118g00490.t01	Wine grape	cytosol	60.91	65.04
KRH05201	Soybean	cytosol	24.59	59.14
Solyc07g007390.2.1	Tomato	nucleus	60.77	56.56
GSMUA_Achr4P20360_001	Banana	cytosol	50.69	54.78
GSMUA_Achr3P00890_001	Banana	cytosol	50.28	54.17
GSMUA_Achr7P05370_001	Banana	cytosol	48.62	53.99
PGSC0003DMT400078952	Potato	cytosol	60.22	53.76
Os09t0556200-00	Rice	cytosol, plasma membrane	48.62	51.31
GSMUA_Achr9P22500_001	Banana	cytosol	47.79	50.22
EER97166	Sorghum	cytosol	47.93	50.14
KRH61724	Soybean	cytosol	50.0	49.86
Zm00001d021400_P001	Maize	cytosol	47.24	49.78
KRH52396	Soybean	cytosol	7.04	49.51
TraesCS5D01G366100.1	Wheat	cytosol	47.51	49.5
TraesCS5A01G357000.1	Wheat	cytosol	47.38	49.35
HORVU5Hr1G088290.2	Barley	cytosol	47.38	49.21
TraesCS5B01G359500.1	Wheat	cytosol	47.24	49.07
GSMUA_Achr4P04120_001	Banana	cytosol	33.98	48.05
CDY51850	Canola	cytosol	38.95	44.34
Bra006557.1-P	Field mustard	cytosol	40.33	43.91
Os08t0296900-01	Rice	cytosol	45.99	43.02
EES13437	Sorghum	cytosol	44.06	42.93
CDX70924	Canola	cytosol	37.71	42.86
Zm00001d024424_P001	Maize	cytosol	43.37	42.38
KRH05202	Soybean	cytosol	20.03	41.67
Zm00001d037923_P001	Maize	cytosol	8.84	39.51
AT5G20360.1	Thale cress	cytosol	43.51	38.94
EER96429	Sorghum	plastid	43.37	33.8
Zm00001d019666_P001	Maize	plastid	43.09	33.66
KRH02008	Soybean	nucleus	36.05	33.63
TraesCS5D01G168200.1	Wheat	cytosol	43.37	33.58
TraesCS5B01G160600.1	Wheat	cytosol	42.82	33.16
TraesCS5A01G163200.1	Wheat	cytosol	42.68	33.05
KRH51148	Soybean	cytosol	35.08	33.03
HORVU5Hr1G050890.1	Barley	cytosol	42.4	32.73
TraesCS5D01G165100.1	Wheat	cytosol	12.57	23.64
TraesCS5A01G160000.1	Wheat	cytosol	12.71	23.23
HORVU5Hr1G050130.1	Barley	cytosol	12.57	22.92
TraesCS5B01G157700.1	Wheat	cytosol	12.98	22.17

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100807387	MapMan:20.2.4.5	Gene3D:3.10.20.90	EMBL:ACUP02008248	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G163600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1LZU9	InterPro:IPR000270
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRH20222	ProteinID:KRH20222	ProteinID:KRH20222.1
InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005	PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904
PANTHER:PTHR22904:SF392	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000233D334	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:27887744..27892434

Molecular Weight (calculated)

82479.7 Da

IEP (calculated)

6.241

GRAVY (calculated)

-0.515

Length

724 amino acids

Sequence
(BLAST)

001: MGKKKKQVGE IGEDGKVGDS SPRAYDNDTM VFISMSQELK NEGNKLFQKR DLEGSILKYE KALKLLPRNH IDVSYLRSNM AACYMQMGLS EFPRAIHECD
101: LALQVTPKYS KALLKRARCY EALNRLDLAL RDASTVVKME PNNVMALEIS EKVKNALEEK GLRVSNSVIE LPPDYVEPPN ALPPEKALKE KTRKKKSSKE
201: EEKAPDGKIP EKQTEEKFED KKAEGSIVVV EKKINTPKKK KAKVKVDEKK ADIKEVIEER SNGRREPVPK KTAKLIFGDD IRYAELPINC SLFQLREVIH
301: DRFPRLGAVL VKYRDQEGDL VTVTSDDELR WAETGSNGSI RLYIVEATPE QDPLFEKFKV KEAEVVGINI AHKSGCVGKA KEIVSSSCIE DWIIQFAKLF
401: KNHVGFESDR YLDFHELGMN LCSEALEETV TSEEAQGLFD IAGDMFQEMT ALALFNWGNV HMSRARKKVY VKEDSSKEHL CEQIKSSYEW ALEEYAKAGE
501: KYEAAIKIKS DFHEGFLALG LQQFEQAKLS WYHALGCNVD LLTWPSTEVL HLYNNAEENM EKGMQIWEES EKQNLSKTSS SNDVRLHLQN MGLDGLFKNI
601: SLDEFAAQEA HMRSQINLLW GTMLYERSFV EFKLGLPIWH ESLEVAVEKF ELAGASPTDI AVVLKNHCSN NTAVDGLAFK IDEIVQAWNE MYKAKMWQSG
701: VPSFRLEPLF RRRVSKTYHA FELA

Best Arabidopsis Sequence Match ( AT2G25290.2 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.