Factsheet for Zm00001d024424_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT4G32070.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT4G32070.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13437	Sorghum	cytosol	75.44	75.24
Os08t0296900-01	Rice	cytosol	62.21	59.56
KRG84467	Soybean	cytosol	10.39	59.23
KRH05201	Soybean	cytosol	21.86	53.82
GSMUA_Achr4P20360_001	Banana	cytosol	47.5	52.54
GSMUA_Achr7P05370_001	Banana	cytosol	46.15	52.45
GSMUA_Achr3P00890_001	Banana	cytosol	47.23	52.08
Zm00001d021400_P001	Maize	cytosol	47.37	51.09
GSMUA_Achr4P04120_001	Banana	cytosol	34.55	50.0
VIT_11s0118g00490.t01	Wine grape	cytosol	45.34	49.56
CDX68815	Canola	cytosol, nucleus, plastid	43.86	47.58
GSMUA_Achr9P22500_001	Banana	cytosol	43.72	47.02
Solyc08g029190.2.1	Tomato	nucleus	42.11	46.64
PGSC0003DMT400038437	Potato	cytosol	41.97	46.56
PGSC0003DMT400049152	Potato	cytosol	41.97	46.56
CDY58928	Canola	cytosol	43.59	46.21
CDY11535	Canola	nucleus	43.99	46.18
CDY38510	Canola	nucleus	42.78	45.55
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	44.13	45.29
Solyc06g065910.2.1	Tomato	cytosol	41.84	45.26
CDX75218	Canola	cytosol	44.26	45.24
PGSC0003DMT400067142	Potato	cytosol	41.57	44.96
Bra007805.1-P	Field mustard	nucleus	45.34	44.5
VIT_04s0008g06310.t01	Wine grape	mitochondrion	44.8	44.21
CDX83226	Canola	cytosol	42.24	43.47
CDX72344	Canola	nucleus	41.16	43.45
KRH20222	Soybean	nucleus	42.38	43.37
AT2G25290.4	Thale cress	cytosol	43.05	42.82
Solyc07g007390.2.1	Tomato	nucleus	44.94	42.8
KRH03587	Soybean	nucleus	41.84	42.76
CDY13473	Canola	nucleus	41.57	42.6
Zm00001d037923_P001	Maize	cytosol	9.31	42.59
Bra023964.1-P	Field mustard	nucleus	41.57	42.37
KRH61724	Soybean	cytosol	41.3	42.15
KRH37816	Soybean	cytosol	41.03	41.64
Bra000549.1-P	Field mustard	nucleus	42.78	41.44
PGSC0003DMT400078952	Potato	cytosol	44.67	40.81
AT4G32070.1	Thale cress	nucleus	43.05	40.79
Zm00001d019666_P001	Maize	plastid	48.45	38.73
KRH52396	Soybean	cytosol	4.99	35.92
CDY51850	Canola	cytosol	29.82	34.75
CDX70924	Canola	cytosol	29.55	34.38
Bra006557.1-P	Field mustard	cytosol	29.96	33.38
KRH05202	Soybean	cytosol	14.84	31.61
Zm00001d039966_P001	Maize	plastid	31.71	30.09
AT5G20360.1	Thale cress	cytosol	32.52	29.79
TraesCS5D01G165100.1	Wheat	cytosol	13.77	26.49
HORVU5Hr1G050130.1	Barley	cytosol	13.36	24.94
TraesCS5B01G157700.1	Wheat	cytosol	13.23	23.11
TraesCS5A01G160000.1	Wheat	cytosol	12.28	22.98

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103641203	MapMan:20.2.4.5	Gene3D:3.10.20.90	UniProt:A0A1Q0XME9	ProteinID:AFW57122.1
ProteinID:AQK41173.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	InterPro:IPR011990
InterPro:IPR013026	UniProt:K7TQE3	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50293	PANTHER:PTHR22904
PANTHER:PTHR22904:SF332	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000220FEB0	EnsemblPlantsGene:Zm00001d024424	EnsemblPlants:Zm00001d024424_P001	EnsemblPlants:Zm00001d024424_T001	SEG:seg	:

Description

HIPOcticosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein

Coordinates

chr10:-:70414238..70420011

Molecular Weight (calculated)

84013.6 Da

IEP (calculated)

6.072

GRAVY (calculated)

-0.541

Length

741 amino acids

Sequence
(BLAST)

001: MGKPPGARNP AEAEADGDDA VFLELSRELK EEGTRLFNRR DFEGAAFKYD KAVQLLPAGR RVEAAHLRAS IAHCYMRMSP AEFHHAIHEC NLALEAVPRY
101: SRALLRRAAC FEALGRPDLA WGDIRTVLRW EPGNRAARQI SDRVRTALED KGISVALDVL PEDENEIASA KGEERKKSRN KRFDSVAGGR EGENGIALLE
201: SASTEKQAGP RQTNGTGNHQ DHTEDSESNG LEKLEQSTET GEKDMGKKRG AHAAGKKPRC GESKQQKHSA VNHCQDNIGA KEEVMKDVKL VFGEDIRCAQ
301: MPANCSLPQL REIVQNKFPS LKAFLIKYKD KEEDLVTITL SEELSWASNL AVSQVPIRFY VVEVNHVQEL GVDGVRRRPS FATLERNRDI MLDNGTIGHD
401: VEHKHYADDW MVQFAQIFKN HVGFSSDAYL DLHDLGLRLH YEAMEDTIQR EEAQEIFEVA ESKFKEMAAL ALFNCGNVHM SRARRRPCLA EDPLQEFILE
501: KVNVSYDWAC TEYAKAGAMF EEAVKTKSDF FEGLIALGQQ KFEQAKLSWY YALACKINME TEVLELFNHA EDNMEKGMDM WERMETLRLK GLSKPSKEKV
601: VLEKMVLEGF VKDISADEAF EQASSIRSHI NILWGTILYE RSVVEFNLGL PSWEESLTVA MEKFKIGGAS QADINVIVKN HCANETTQEG LSFKVEEIVQ
701: AWSEMHDAKN WRSGPLYFRL QPVFRRRAPK LHHILEHMHY A

Best Arabidopsis Sequence Match ( AT4G32070.1 )
(BLAST)

001: MGKPTAKKKN PETPKDASGG GGGGGGKSGK TYHRSTSRVF DEDMEIFISR ALELKEEGNK LFQKRDHEGA MLSFDKALKL LPKDHIDVAY LRTSMASCYM
101: QMGLGEYPNA ISECNLALEA SPRYSKALVR RSRCYEALNK LDYAFRDARI VLNMEPGNVS ANEIFDRVKK VLVDKGIDVD EMEKDFVDVQ PVCAARLKKI
201: VKERLRKSKK KKKSGGKDEE LKSPKVVVVD KGDEAEGRNK PKEEKSDKSD IDGKIGGKRE EKKTSFKSDK GQKKKSGGNK AGEERKVEDK VVVMDKEVIA
301: SEIVDGGGSK KEGATVTRTI KLVHGDDIRW AQLPLDSTVR LVRDVIRDRF PALRGFLIKY RDTEGDLVTI TTTDELRLAA STHDKLGSLR LYIAEVNPDQ
401: EPTYDGMSNT ESTDKVSKRL SSLADNGSVG EYVGSDKASG CFENWIFQFA QLFKNHVGFD SDSYVDLHDL GMKLYTEAME DAVTGEDAQE LFQIAADKFQ
501: EMGALALLNW GNVHMSKARK QVCIPEDASR EAIIEAVEAA FVWTQNEYNK AAEKYEEAIK VKPDFYEALL ALGQEQFEHA KLCWYHALKS KVDLESEASQ
601: EVLKLYNKAE DSMERGMQIW EEMEECRLNG ISKLDKHKNM LRKLELDELF SEASEEETVE QTANMSSQIN LLWGSLLYER SIVEYKLGLP TWDECLEVAV
701: EKFELAGASA TDIAVMVKNH CSSESALEGM GFKIDEIVQA WNEMYDAKRW QMGVPSFRLE PMFRRRAPKL HDILENVFSG PV

Arabidopsis Description

Phox4Protein PHOX4 [Source:UniProtKB/Swiss-Prot;Acc:F4JTI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.