Factsheet for VIT_04s0008g06310.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG84467	Soybean	cytosol	12.78	73.85
KRH05201	Soybean	cytosol	27.43	68.44
Solyc08g029190.2.1	Tomato	nucleus	60.59	68.01
PGSC0003DMT400038437	Potato	cytosol	60.45	67.96
PGSC0003DMT400049152	Potato	cytosol	60.45	67.96
VIT_11s0118g00490.t01	Wine grape	cytosol	60.05	66.52
Solyc06g065910.2.1	Tomato	cytosol	58.85	64.53
PGSC0003DMT400067142	Potato	cytosol	58.59	64.23
GSMUA_Achr4P20360_001	Banana	cytosol	54.73	61.34
KRH61724	Soybean	cytosol	58.99	61.02
CDX68815	Canola	cytosol, nucleus, plastid	55.39	60.91
CDY58928	Canola	cytosol	55.66	59.8
KRH52396	Soybean	cytosol	8.12	59.22
GSMUA_Achr3P00890_001	Banana	cytosol	52.73	58.93
CDY11535	Canola	nucleus	55.39	58.92
GSMUA_Achr7P05370_001	Banana	cytosol	51.13	58.9
CDY38510	Canola	nucleus	54.33	58.62
VIT_00s1384g00010.t01	Wine grape	cytosol	4.66	58.33
VIT_00s0787g00010.t01	Wine grape	cytosol	10.92	57.75
CDX75218	Canola	cytosol	55.39	57.38
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	54.99	57.2
CDX83226	Canola	cytosol	54.59	56.94
CDX72344	Canola	nucleus	53.13	56.84
Os09t0556200-00	Rice	cytosol, plasma membrane	51.4	56.27
Bra007805.1-P	Field mustard	nucleus	56.46	56.16
CDY13473	Canola	nucleus	54.06	56.15
Zm00001d021400_P001	Maize	cytosol	51.13	55.9
Bra023964.1-P	Field mustard	nucleus	54.06	55.85
EER97166	Sorghum	cytosol	51.4	55.78
AT2G25290.4	Thale cress	cytosol	55.13	55.57
GSMUA_Achr4P04120_001	Banana	cytosol	37.15	54.49
AT4G32070.1	Thale cress	nucleus	56.72	54.48
GSMUA_Achr9P22500_001	Banana	cytosol	49.67	54.14
Bra000549.1-P	Field mustard	nucleus	54.99	53.99
TraesCS5A01G357000.1	Wheat	cytosol	48.73	52.66
TraesCS5D01G366100.1	Wheat	cytosol	48.47	52.37
TraesCS5B01G359500.1	Wheat	cytosol	48.2	51.94
HORVU5Hr1G088290.2	Barley	cytosol	48.07	51.79
Os08t0296900-01	Rice	cytosol	48.47	47.03
EES13437	Sorghum	cytosol	45.14	45.63
KRH05202	Soybean	cytosol	21.04	45.4
Zm00001d024424_P001	Maize	cytosol	44.21	44.8
VIT_02s0012g02600.t01	Wine grape	cytosol	9.19	44.23
VIT_00s1008g00010.t01	Wine grape	cytosol	12.92	41.45
Zm00001d037923_P001	Maize	cytosol	8.52	39.51
VIT_17s0000g03920.t01	Wine grape	cytosol	10.12	38.0
EER96429	Sorghum	plastid	45.67	36.92
Zm00001d019666_P001	Maize	plastid	44.87	36.35
TraesCS5D01G168200.1	Wheat	cytosol	44.47	35.72
TraesCS5B01G160600.1	Wheat	cytosol	44.07	35.4
TraesCS5A01G163200.1	Wheat	cytosol	43.94	35.29
HORVU5Hr1G050890.1	Barley	cytosol	43.28	34.65
TraesCS5D01G165100.1	Wheat	cytosol	13.85	27.01
HORVU5Hr1G050130.1	Barley	cytosol	13.98	26.45
TraesCS5B01G157700.1	Wheat	cytosol	13.85	24.53
TraesCS5A01G160000.1	Wheat	cytosol	12.78	24.24

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100252640	wikigene:100252640	MapMan:20.2.4.5	Gene3D:3.10.20.90	ProteinID:CCB46854
ProteinID:CCB46854.1	UniProt:F6H3W5	EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100252640	wikigene:LOC100252640
InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005	PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904
PANTHER:PTHR22904:SF419	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000210955F	ArrayExpress:VIT_04s0008g06310	EnsemblPlantsGene:VIT_04s0008g06310	EnsemblPlants:VIT_04s0008g06310.t01
unigene:Vvi.23532	RefSeq:XP_002283146	RefSeq:XP_002283146.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:6153541..6159137

Molecular Weight (calculated)

85324.2 Da

IEP (calculated)

5.272

GRAVY (calculated)

-0.419

Length

751 amino acids

Sequence
(BLAST)

001: MCYYRNWSLS TRASLHPTGK KKTPGPSKPG DASAKHGKTT AFDEDTAVFI TMSQELKEEG NKLFQKRDHE GAMLKYEKAL KLLPKNHIDI AYLRSNMASC
101: YMLMGIGEYP RAINQCNLAI EVSPKYSKAL LKRAKCYEAL NRLDLALKDV NSILSIESNN LAALEIADRV KKAIEEKGIK VDDKEIVMAA EYTESPPYKA
201: VKQKTKKKKS NKTEVKKLLD KAVVKPVDKA VVKPVDKAVV EENVGVVKEN VDAVKENVDA VKEKAVAPET AEEEEVVVSE IVKEEQVVTV SRPVKLVFNE
301: DIRWAQLPVN CSIRLVRDIV QDRFPSLKGI LVKYRDHEGD LVTITTNDEL RFAEASGDPQ GSLRLYVAEV SPDHEPLYEG MENEEEVYNH DRRGIHVKEN
401: GNVEKGGDME NGFSCIDDWI VQFARLFKNY VGFNSDSYLD LHELGMKLYS EAMEDAVTSE EAQELFEIAA DKFQEMAALA LFNWGNVHMS MARKRVFLTE
501: DGSRESIIAQ IKTAYEWAQK EYIKASLRYE EALKIKPDFY EGHLALGQQQ FEQAKLSWYY AIGCKIDLES GPSMEVLQLY NKAEDSMERG MLMWEEMEER
601: RLNGLSKLDK YQAQLQKMGL DALFKDISAS DVAEQAANMK SQIYLLWGTL LYERSIVEFK LGLLSWEECL EVAVEKFELA GASPTDIAVM IKNHCSNGAA
701: LEGLGFDINE IVQAWNEMYD AKRWQIGVPS FRLEPLFRRR VPKLHHILEH I

Best Arabidopsis Sequence Match ( AT2G25290.2 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.