Factsheet for VIT_00s1008g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1384g00010.t01	Wine grape	cytosol	25.64	100.0
VIT_00s0787g00010.t01	Wine grape	cytosol	55.98	92.25
VIT_17s0000g03920.t01	Wine grape	cytosol	44.87	52.5
VIT_02s0012g02600.t01	Wine grape	cytosol	33.76	50.64
CDY69227	Canola	cytosol	41.03	19.96
GSMUA_Achr1P18260_001	Banana	nucleus	53.85	17.85
KRH51148	Soybean	cytosol	58.55	17.82
PGSC0003DMT400043113	Potato	cytosol	58.97	17.74
Solyc02g081200.1.1	Tomato	nucleus	58.97	17.74
KRH02008	Soybean	nucleus	58.55	17.65
Solyc02g036360.1.1	Tomato	nucleus	56.84	17.48
AT1G62390.1	Thale cress	plastid	54.7	17.04
PGSC0003DMT400055266	Potato	cytosol	55.98	16.97
EES00364	Sorghum	plastid	54.7	16.41
Zm00001d039966_P001	Maize	plastid	52.56	15.75
TraesCS5B01G163300.1	Wheat	nucleus, plastid	52.56	15.67
TraesCS5A01G164700.1	Wheat	nucleus, plastid	52.14	15.58
Os09t0135400-01	Rice	nucleus	52.14	15.52
TraesCS5D01G170500.1	Wheat	nucleus	51.71	15.51
CDY30038	Canola	cytosol, plastid	54.7	15.5
Bra019727.1-P	Field mustard	cytosol	55.13	15.16
HORVU5Hr1G051200.1	Barley	mitochondrion	51.71	14.94
VIT_11s0118g00490.t01	Wine grape	cytosol	43.16	14.9
VIT_04s0008g06310.t01	Wine grape	mitochondrion	41.45	12.92

Protein Annotations

ArrayExpress:VIT_00s1008g00010	EMBL:FN595030	EMBL:FN596556	EnsemblPlants:VIT_00s1008g00010.t01	EnsemblPlantsGene:VIT_00s1008g00010	PANTHER:PTHR22904
PANTHER:PTHR22904:SF437	ProteinID:CCB45325	ProteinID:CCB45325.1	ProteinID:CCB61113	ProteinID:CCB61113.1	SEG:seg
UniParc:UPI0002109187	UniProt:F6I2E6	MapMan:20.2.4.5	:	:	:

Description

No Description!

Coordinates

chrUn:+:37529801..37532153

Molecular Weight (calculated)

26805.4 Da

IEP (calculated)

4.312

GRAVY (calculated)

-0.502

Length

234 amino acids

Sequence
(BLAST)

001: MFLFWGPPYE ILSLREQGLD VQLRVLTEKR PPESEGLEGE DNGSHSSLGD SVLDTAGTEF EKTEKEAPKE KAGASEDPES KEVEMDDWLF GFTQLFRTHV
101: GIDLDARIDL HELGMELCSE ALEETVTSEE AQRLFDKDAP KFQEVAALAF FNWGNVHMCT ARKRIPLDES ATKDVMATQL QVAYDWVREK YSIAKEKYEE
201: AFFIKPDFYE GLLALGNSNL KWQNFISHLL WLRN

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.