CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1384g00010.t01	Wine grape	cytosol	10.39	83.33
VIT_00s0787g00010.t01	Wine grape	cytosol	16.01	54.23
Bra019727.1-P	Field mustard	cytosol	90.85	51.35
VIT_17s0000g03920.t01	Wine grape	cytosol	19.96	48.0
CDY30038	Canola	cytosol, plastid	78.38	45.64
AT1G62390.1	Thale cress	plastid	67.78	43.41
VIT_00s1008g00010.t01	Wine grape	cytosol	19.96	41.03
Solyc02g036360.1.1	Tomato	nucleus	60.5	38.24
Solyc02g081200.1.1	Tomato	nucleus	61.33	37.92
PGSC0003DMT400043113	Potato	cytosol	60.91	37.66
KRH02008	Soybean	nucleus	60.71	37.63
PGSC0003DMT400055266	Potato	cytosol	59.88	37.31
KRH51148	Soybean	cytosol	58.21	36.41
GSMUA_Achr1P18260_001	Banana	nucleus	53.43	36.4
TraesCS5A01G164700.1	Wheat	nucleus, plastid	53.01	32.57
TraesCS5D01G170500.1	Wheat	nucleus	52.81	32.56
TraesCS5B01G163300.1	Wheat	nucleus, plastid	53.01	32.48
EES00364	Sorghum	plastid	51.98	32.05
Zm00001d039966_P001	Maize	plastid	51.56	31.75
Os09t0135400-01	Rice	nucleus	51.77	31.68
HORVU5Hr1G051200.1	Barley	mitochondrion	53.01	31.48
VIT_02s0012g02600.t01	Wine grape	cytosol	8.94	27.56
CDX75218	Canola	cytosol	33.89	22.48
CDX68815	Canola	cytosol, nucleus, plastid	31.6	22.25
CDX70924	Canola	cytosol	29.11	21.98
CDY38510	Canola	nucleus	31.6	21.84
CDX83226	Canola	cytosol	32.43	21.67
CDY51850	Canola	cytosol	28.48	21.54
CDY11535	Canola	nucleus	31.39	21.39
CDY58928	Canola	cytosol	30.98	21.32
CDY13473	Canola	nucleus	32.02	21.3
CDX72344	Canola	nucleus	30.56	20.94

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	UniProt:A0A078JUP2	EnsemblPlants:CDY69227	ProteinID:CDY69227
ProteinID:CDY69227.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00084237001
InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF437	SMART:SM00028	SMART:SM00666
SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EE6E35
SEG:seg	:	:	:	:	:

Description

BnaA06g38200DBnaA06g38200D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUP2]

Coordinates

chrLK038906:-:3..1553

Molecular Weight (calculated)

52650.3 Da

IEP (calculated)

5.983

GRAVY (calculated)

-0.514

Length

481 amino acids

Sequence
(BLAST)

001: MGKSGARKKK SKQANSSETS SSSVNGGGDF DASVYLKRAH ELKEEGNKKF QAKDFQGALD QYADALKLVP KSHRDRAVFH SNRAACLMQM KPIDYDKVIS
101: ECSMALQVHP GFTRALLRRA RALEAVGKYE LAAQDVNLLL GADPNHKDAT EMSRRLMMCG PGGPQSRPSP AALGASAALG GPVNGLGPCL PSRQVHKKVA
201: SSSSSPVALP VVSSNSSKVE RPKMNPLVEN GHEGKTQMAK IVLKPLNDSS FKGAEQSSSS VAVVAQEKVT RWRPLKFVYD HDIRLGQMPV NCGFKVLREI
301: VRSRFPSSKS VLIKYKDNDG DLVTVTCTAE LRLAETAADV EEEEEVEEKA VEEEDIRASL SETVSETEVS NEKSDKEKTP SSEDPEMKEL EMDDWLFDFA
401: QLFRSHVGID PDAHVDLHEL GMELCSEALE ETVTSEEAQP LFEKAAAKFQ EVAALAFFNW GNVHMCAARK RIPLEESGGK D

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.