CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1384g00010.t01	Wine grape	cytosol	6.05	83.33
VIT_00s0787g00010.t01	Wine grape	cytosol	14.04	81.69
CDY69227	Canola	cytosol	45.64	78.38
AT1G62390.1	Thale cress	plastid	64.89	71.37
KRH02008	Soybean	nucleus	57.51	61.21
Solyc02g036360.1.1	Tomato	nucleus	55.93	60.71
PGSC0003DMT400055266	Potato	cytosol	56.3	60.23
KRH51148	Soybean	cytosol	56.05	60.21
PGSC0003DMT400043113	Potato	cytosol	56.42	59.9
Solyc02g081200.1.1	Tomato	nucleus	55.93	59.38
VIT_02s0012g02600.t01	Wine grape	cytosol	11.14	58.97
GSMUA_Achr1P18260_001	Banana	nucleus	48.43	56.66
VIT_00s1008g00010.t01	Wine grape	cytosol	15.5	54.7
VIT_17s0000g03920.t01	Wine grape	cytosol	13.08	54.0
TraesCS5D01G170500.1	Wheat	nucleus	50.48	53.46
TraesCS5B01G163300.1	Wheat	nucleus, plastid	50.36	52.99
TraesCS5A01G164700.1	Wheat	nucleus, plastid	50.12	52.87
Zm00001d039966_P001	Maize	plastid	49.76	52.62
EES00364	Sorghum	plastid	49.27	52.18
Os09t0135400-01	Rice	nucleus	48.67	51.15
HORVU5Hr1G051200.1	Barley	mitochondrion	49.64	50.62
CDX68815	Canola	cytosol, nucleus, plastid	29.9	36.16
CDY38510	Canola	nucleus	30.39	36.06
CDY11535	Canola	nucleus	30.15	35.27
CDY58928	Canola	cytosol	29.78	35.19
CDX75218	Canola	cytosol	30.63	34.9
CDX83226	Canola	cytosol	30.15	34.58
CDX72344	Canola	nucleus	29.18	34.33
CDY13473	Canola	nucleus	29.18	33.33
CDX70924	Canola	cytosol	24.33	31.55
CDY51850	Canola	cytosol	24.21	31.45

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	UniProt:A0A078GZN4	EnsemblPlants:CDY30038	ProteinID:CDY30038
ProteinID:CDY30038.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00044574001
InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564
PFscan:PS50005	PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF437	SMART:SM00028
SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0004EEE6AF	SEG:seg	:	:	:	:

Description

BnaC05g09820DBnaC05g09820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZN4]

Coordinates

chrLK032248:-:32488..36076

Molecular Weight (calculated)

91159.9 Da

IEP (calculated)

5.228

GRAVY (calculated)

-0.486

Length

826 amino acids

Sequence
(BLAST)

001: MGKSGARKKK SGGGTKQQAN SNSSEISSSS VNGGGDFDAS VYLKRAHELK EEGNNKFQSK DFQGALEQYA DALKLVPKSH PDRAVFHSNR AACLMQMKPI
101: DYEKVISECS MALQVQPGFT RALLRRARAL EAVGKYELAV QDVNLLLGAD PNHKDATEMS RRLMMSGPGG PQSRPSPAAL GASAALGGPV NGLGPCLPSR
201: QVHKKVAPSP VALPVVSKVE RPKMTENGQT QMAKIVLKPS LNDSSSKGAE QSSSSVAVAV AVAQEKVTRW RPLKFVYDHD IRLGQMPVNC GFKVLREIVR
301: SRFPSSKSVL IKYKDNDGDL VTVTCTAELR LAETAADGLL TKEPESDKSD SVGMLRLHVV DVSPEQEPPL LDEVEEEEVA EEKPPVEEED IRASLSETEV
401: SNEKSDKEKT PSSEDPEMKE LEMDDWLFDF AQLFRSHVGI DPDAHVDLHE LGMELCSEAL EETVTSEEAQ PLFEKAAAKF QEVAALAFFN WGNVHMCAAR
501: KRIPLEESGG KEKVAEQLQT AYEWVKERYT LAKEKYEHAL SIKPDFYEGL LALGQQQFEM AKLHWSFALA QKMDLSVWDA TETLALFDSA EEKMKAATEM
601: WEKLEEQRMN DLKNPNKKEE VSKRRKKQGD GENGEASEAV TAAEAAEQAI AMRSQIHLFW GNMLFERSQV ECKISVSGWE KNLDSAVERF KLAGASETDI
701: STVVKNHCSN EAAAEGDDKK DQVSYPSYPT QHSLPHIYAE DEEGGELVFG GFCESGCSAI ADSGTSLLEG PTVSKNLKLE LLASCARLLW ISTGRPFWIC
801: FCPRLNRRKS ARRLVCALLM YVALSR

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.