Factsheet for GSMUA_Achr1P18260_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0787g00010.t01	Wine grape	cytosol	16.01	79.58
VIT_00s1384g00010.t01	Wine grape	cytosol	6.37	75.0
VIT_02s0012g02600.t01	Wine grape	cytosol	13.31	60.26
TraesCS5D01G170500.1	Wheat	nucleus	62.46	56.54
TraesCS5A01G164700.1	Wheat	nucleus, plastid	61.9	55.81
TraesCS5B01G163300.1	Wheat	nucleus, plastid	61.47	55.29
Zm00001d039966_P001	Maize	plastid	60.76	54.93
EES00364	Sorghum	plastid	60.48	54.74
Os09t0135400-01	Rice	nucleus	60.34	54.2
VIT_00s1008g00010.t01	Wine grape	cytosol	17.85	53.85
HORVU5Hr1G051200.1	Barley	mitochondrion	61.76	53.83
CDY69227	Canola	cytosol	36.4	53.43
KRH02008	Soybean	nucleus	58.36	53.09
PGSC0003DMT400043113	Potato	cytosol	58.22	52.83
AT1G62390.1	Thale cress	plastid	55.95	52.6
Solyc02g081200.1.1	Tomato	nucleus	57.93	52.57
VIT_17s0000g03920.t01	Wine grape	cytosol	14.87	52.5
Solyc02g036360.1.1	Tomato	nucleus	56.52	52.43
KRH51148	Soybean	cytosol	56.37	51.76
PGSC0003DMT400055266	Potato	cytosol	56.37	51.55
CDY30038	Canola	cytosol, plastid	56.66	48.43
Bra019727.1-P	Field mustard	cytosol	56.94	47.24
GSMUA_Achr4P20360_001	Banana	cytosol	36.4	38.36
GSMUA_Achr3P00890_001	Banana	cytosol	36.26	38.1
GSMUA_Achr9P22500_001	Banana	cytosol	35.69	36.57
GSMUA_Achr7P05370_001	Banana	cytosol	33.57	36.35
GSMUA_Achr4P04120_001	Banana	cytosol	25.5	35.16

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
EnsemblPlantsGene:GSMUA_Achr1G18260_001	EnsemblPlants:GSMUA_Achr1P18260_001	EnsemblPlants:GSMUA_Achr1T18260_001	InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:M0S0Y4	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005	PFscan:PS50293
PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF437	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452
SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002967749	SEG:seg

Description

cytoskeletal protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G18260_001]

Coordinates

chr1:-:13638001..13641778

Molecular Weight (calculated)

76875.7 Da

IEP (calculated)

5.970

GRAVY (calculated)

-0.454

Length

706 amino acids

Sequence
(BLAST)

001: MGKSGGRKKK NATAPAVAAT ATATAPAPAP APAPAAPASP HPPPPPTAAS NGVVEIDLSL LLKRAHGLKE EGNRLFQAKD YAGALRQYEM ALKLTPRSHA
101: DRAVFHSNRA ACLMQMRPVD HEAVAAECSL ALQAQPGFPR ALLRRARALE ALRRYDVALQ DVHALLDQDP SHSDALDLAR RLRAALAPSA PAAADPGSRP
201: SPAALGASAV RVGAPNSMTA NKPTSSSQNH HPPTSPALFN GPETKPPRQL LSKPSSAEAS SQPVLVGSPV DGSQQSAGKE PSLRTVVNRW RPLKLVYDHD
301: IRLGQMPAYC SFKVLREIVA NRFPSSKSVL IKYKDADGDL VTVTSTAELR LAESSMPEDE GLIKTDQKAE EVAKDNGEDA NNGCGHAECK EAEIDDWLFE
401: FAHLFRNQVG IDPDAHLDLH ELGMELCSEA LEETITGEEA QGLFDMAAAK FQEVAALAFF NWGNVHMCAA RKRIPLDEAS PKEVMAAQLQ TAYDWVRERY
501: ALAGQKYEEA LQIKPDFYEG LLALGQQQFE TAKLHWSFVL AKNVDLSTWD SSETIRLFDS AEEKMKSATE MWEKVEEQRI SELKDLGKSK EDELLKKRKK
601: QKAIDGQAEL SADEAAEQAA AMRSQIHLFW GNMLFERSQL EFKLGFGNWK KNLDAAVERF TLAGASEGDI STVLKKHASC ETEAECDEKK VTSSSTTASE
701: ISPGMY

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.