Factsheet for Solyc02g036360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055266	Potato	cytosol	95.66	94.3
VIT_00s0787g00010.t01	Wine grape	cytosol	15.64	83.8
VIT_00s1384g00010.t01	Wine grape	cytosol	6.57	83.33
Solyc02g081200.1.1	Tomato	nucleus	79.76	78.02
KRH02008	Soybean	nucleus	70.04	68.69
KRH51148	Soybean	cytosol	66.49	65.8
VIT_02s0012g02600.t01	Wine grape	cytosol	12.88	62.82
AT1G62390.1	Thale cress	plastid	61.5	62.32
CDY69227	Canola	cytosol	38.24	60.5
VIT_00s1008g00010.t01	Wine grape	cytosol	17.48	56.84
GSMUA_Achr1P18260_001	Banana	nucleus	52.43	56.52
CDY30038	Canola	cytosol, plastid	60.71	55.93
VIT_17s0000g03920.t01	Wine grape	cytosol	14.32	54.5
Bra019727.1-P	Field mustard	cytosol	60.71	54.29
TraesCS5A01G164700.1	Wheat	nucleus, plastid	52.96	51.47
TraesCS5D01G170500.1	Wheat	nucleus	52.69	51.41
TraesCS5B01G163300.1	Wheat	nucleus, plastid	52.69	51.08
Zm00001d039966_P001	Maize	plastid	52.04	50.7
EES00364	Sorghum	plastid	51.25	50.0
Os09t0135400-01	Rice	nucleus	51.51	49.87
HORVU5Hr1G051200.1	Barley	mitochondrion	52.83	49.63
Solyc08g029190.2.1	Tomato	nucleus	34.95	39.76
Solyc06g065910.2.1	Tomato	cytosol	34.3	38.1
Solyc07g007390.2.1	Tomato	nucleus	35.09	34.32

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K4B5S9
InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005	PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904
PANTHER:PTHR22904:SF437	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277	EnsemblPlantsGene:Solyc02g036360.1
EnsemblPlants:Solyc02g036360.1.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002767736	SEG:seg

Description

No Description!

Coordinates

chr2:-:30576501..30578786

Molecular Weight (calculated)

84468.3 Da

IEP (calculated)

5.143

GRAVY (calculated)

-0.512

Length

761 amino acids

Sequence
(BLAST)

001: MGKSGGRKKK GQNQGENHKP VVNGTVDLDS SIFLKRAHEL KEEGNKRFQA KDFVGALQQY DNALKLTPKT HPERAVFHSN RAACMMQMKP IDYDSVISEC
101: TMALQVQPRF VRALLRRARA LEAVCKYEMA MQDVQMLLDA DGNHQDALEI AGRLSMILGP RQDAQQDLQS RPSPAALGAS AVGAASIAGL GPCLPSRSMS
201: KKPVPSTGAM VVSVNSKPNK PSYVMPAENG TQAKVQLPRV SLKPSTGPSK PNVSPSRDDQ KENASTSASI TVHGHSKEAV SRWRPLKLVY DHDIRLAQMP
301: VNCSFRVLRD IVMKRFPMSK SVLVKYKDSD GDLVTITCTA ELRLAESWVD SLVPKDPDAD EGDFIGMLRL HIVEVSPEQE PALLEEEERP VESEENIADE
401: SVSHSSLSDS VVETLESEIN KSEKGITKEK TITEGPECKE VEMDDWLFEF AQLFRTHVGI DPDAHIDLHE LGMELSAEAL EETVTSEAAQ ALFDKAALKF
501: QEVAALAFFN WGNVHMCAAR KRMPIDDSAS KETMAIKLQA AYDWVKEKYS LAKEKYEEAL SIKPDFYEGL LALGQQQFEM AKLHWSFVLA KKEDLSSWDR
601: TETLALFESA EEKMKAATQM WEKLEELRDN ELKDPSTIKK DELLRRKKKQ GSGPEGEVSA TGGPGEISAD EAAQQAAVMR SQIHLFWGNM LFERSQVECK
701: LGLIGWKEKL DTAVERFKLA GASEIDISTV LKNHCSNEEA TQGSQEMVES LKTEGNDNPN D

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.