Factsheet for VIT_17s0000g03920.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1384g00010.t01	Wine grape	cytosol	26.5	88.33
VIT_00s0787g00010.t01	Wine grape	cytosol	50.5	71.13
VIT_00s1008g00010.t01	Wine grape	cytosol	52.5	44.87
VIT_02s0012g02600.t01	Wine grape	cytosol	31.0	39.74
CDY69227	Canola	cytosol	48.0	19.96
KRH51148	Soybean	cytosol	57.5	14.95
GSMUA_Achr1P18260_001	Banana	nucleus	52.5	14.87
KRH02008	Soybean	nucleus	57.5	14.82
AT1G62390.1	Thale cress	plastid	55.5	14.78
Solyc02g081200.1.1	Tomato	nucleus	56.5	14.52
PGSC0003DMT400043113	Potato	cytosol	56.0	14.4
PGSC0003DMT400055266	Potato	cytosol	55.5	14.38
Solyc02g036360.1.1	Tomato	nucleus	54.5	14.32
CDY30038	Canola	cytosol, plastid	54.0	13.08
EES00364	Sorghum	plastid	50.5	12.95
TraesCS5B01G163300.1	Wheat	nucleus, plastid	50.0	12.74
TraesCS5D01G170500.1	Wheat	nucleus	49.5	12.69
Bra019727.1-P	Field mustard	cytosol	54.0	12.69
Zm00001d039966_P001	Maize	plastid	49.5	12.68
TraesCS5A01G164700.1	Wheat	nucleus, plastid	49.5	12.64
VIT_11s0118g00490.t01	Wine grape	cytosol	41.5	12.24
HORVU5Hr1G051200.1	Barley	mitochondrion	49.5	12.22
Os09t0135400-01	Rice	nucleus	48.0	12.21
VIT_04s0008g06310.t01	Wine grape	mitochondrion	38.0	10.12

Protein Annotations

ArrayExpress:VIT_17s0000g03920	EMBL:FN594950	EnsemblPlants:VIT_17s0000g03920.t01	EnsemblPlantsGene:VIT_17s0000g03920	PANTHER:PTHR22904	PANTHER:PTHR22904:SF437
ProteinID:CCB43206	ProteinID:CCB43206.1	UniParc:UPI000210833A	UniProt:F6GTJ7	MapMan:20.2.4.5	:

Description

No Description!

Coordinates

chr17:+:3837403..3839460

Molecular Weight (calculated)

21866.4 Da

IEP (calculated)

4.177

GRAVY (calculated)

-0.400

Length

200 amino acids

Sequence
(BLAST)

001: MRVRGAGAIG RDDSENDGLL VGEEEVIPSV GDEVKVSIAS GAIEDNGSHS SLGDSVLDTV GTEIEKTENE TPKEKAGASE DPESKKVEMN DWLFGFTQLF
101: RTHVGIDPDA HFDLHELGME LCSEALEDTV TSEEAQSLFD KAAPKFQEVV ALAFFNWGNV HMCAARKRIP LDESAAKDVM ATQLQVAYDW VREKCSFAKE

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.