Factsheet for Zm00001d039966_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00364	Sorghum	plastid	79.26	79.36
VIT_00s0787g00010.t01	Wine grape	cytosol	13.96	76.76
TraesCS5D01G170500.1	Wheat	nucleus	74.52	74.62
TraesCS5A01G164700.1	Wheat	nucleus, plastid	74.52	74.33
TraesCS5B01G163300.1	Wheat	nucleus, plastid	73.88	73.5
VIT_00s1384g00010.t01	Wine grape	cytosol	5.63	73.33
Os09t0135400-01	Rice	nucleus	73.11	72.65
HORVU5Hr1G051200.1	Barley	mitochondrion	73.88	71.23
GSMUA_Achr1P18260_001	Banana	nucleus	54.93	60.76
VIT_02s0012g02600.t01	Wine grape	cytosol	11.78	58.97
KRH02008	Soybean	nucleus	54.42	54.77
KRH51148	Soybean	cytosol	53.52	54.36
AT1G62390.1	Thale cress	plastid	50.7	52.73
Solyc02g081200.1.1	Tomato	nucleus	52.5	52.7
VIT_00s1008g00010.t01	Wine grape	cytosol	15.75	52.56
PGSC0003DMT400043113	Potato	cytosol	51.86	52.06
Solyc02g036360.1.1	Tomato	nucleus	50.7	52.04
CDY69227	Canola	cytosol	31.75	51.56
PGSC0003DMT400055266	Potato	cytosol	50.83	51.42
CDY30038	Canola	cytosol, plastid	52.62	49.76
VIT_17s0000g03920.t01	Wine grape	cytosol	12.68	49.5
Bra019727.1-P	Field mustard	cytosol	51.98	47.71
Zm00001d021400_P001	Maize	cytosol	32.39	36.83
Zm00001d024424_P001	Maize	cytosol	30.09	31.71
Zm00001d019666_P001	Maize	plastid	30.47	25.67
Zm00001d037923_P001	Maize	cytosol	4.1	19.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	UniProt:A0A096PY84	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	ProteinID:ONM30222.1
InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005	PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904
PANTHER:PTHR22904:SF437	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00022135AC	EnsemblPlantsGene:Zm00001d039966	EnsemblPlants:Zm00001d039966_P001	EnsemblPlants:Zm00001d039966_T001
SEG:seg	:	:	:	:	:

Description

Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein

Coordinates

chr3:+:20997443..20999788

Molecular Weight (calculated)

85897.8 Da

IEP (calculated)

5.425

GRAVY (calculated)

-0.396

Length

781 amino acids

Sequence
(BLAST)

001: MGKSGAKKKK PATAAAAAAA KPPPASVELK ATPSSSSLPA ANGAAPHQVV DAGVLLRRAH ELKEEGNRLF QSRDYAGALR QYELALRLAP RGHPDRAVFH
101: SNRAACLLQL RPVDHEAVAQ ECSLALQAEP RFPRALLRRA RALEALGRHE LALADALALL ALDPDHREAI DLSYRLRSRV NASSAASASS APEPTSRPSP
201: AALGASAVVA GLGHSLPARS FPKKQPPPAS PANLQPNLAV IPKSNPPPLP KLVPFSNSPP SSTKPLAADS SEKAMTPPVA SLLPERAAPL INKKVVTRWR
301: PLKLVYDHDI RLGQVPEKCS FRTLREFVAK RFPSSKAVLI KYKDADGDLV TITSTEELRL AELFIDKVGH EVVENGREDD NKLPVLRLHL VEVSPEQEPT
401: LPLEEEKLEE DEELLINGED STLHALAVVT DAEVVKQDVE NRSADQSVET GKNDCGHAEC KEAEIDDWLL QFADLFRNQV GIDADAHLDL HELGMELCSE
501: ALEETVTSME AQVLFELAAS KFQEVAALAL FNWGNVHMCE ARKRIPLDES APKEVMAAQL RTAYYWVKER YALAGHKYEE ALKIKPDFYE GLLALGQQHF
601: ETAKLHWSYA LADKADLSTW DSLETFKLFD SAEQNMRAAT EMWEKVEEQR MAELKEPGAC DKDGVLRKRQ HGAGGQPELT PEEAAEQAAV MRQQIHLFWG
701: NMLFERSQVE FKLSVGDWKT NLDASVERFK LAGASESDIL TVLKNHFSNV ASECEEKKVM TSGTEISQTN DNVEDKCVVE T

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.