CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51148	Soybean	cytosol	89.05	89.86
VIT_00s0787g00010.t01	Wine grape	cytosol	15.85	86.62
VIT_00s1384g00010.t01	Wine grape	cytosol	6.57	85.0
PGSC0003DMT400043113	Potato	cytosol	71.01	70.82
Solyc02g081200.1.1	Tomato	nucleus	70.75	70.57
Solyc02g036360.1.1	Tomato	nucleus	68.69	70.04
PGSC0003DMT400055266	Potato	cytosol	69.59	69.95
VIT_02s0012g02600.t01	Wine grape	cytosol	13.53	67.31
AT1G62390.1	Thale cress	plastid	64.69	66.84
CDY69227	Canola	cytosol	37.63	60.71
VIT_00s1008g00010.t01	Wine grape	cytosol	17.65	58.55
GSMUA_Achr1P18260_001	Banana	nucleus	53.09	58.36
CDY30038	Canola	cytosol, plastid	61.21	57.51
VIT_17s0000g03920.t01	Wine grape	cytosol	14.82	57.5
Bra019727.1-P	Field mustard	cytosol	61.47	56.05
TraesCS5A01G164700.1	Wheat	nucleus, plastid	55.15	54.66
TraesCS5B01G163300.1	Wheat	nucleus, plastid	55.15	54.52
Zm00001d039966_P001	Maize	plastid	54.77	54.42
TraesCS5D01G170500.1	Wheat	nucleus	54.64	54.36
EES00364	Sorghum	plastid	54.25	53.97
Os09t0135400-01	Rice	nucleus	53.35	52.67
HORVU5Hr1G051200.1	Barley	mitochondrion	54.9	52.59
KRH05201	Soybean	cytosol	15.59	40.2
KRH03587	Soybean	nucleus	33.89	36.28
KRH20222	Soybean	nucleus	33.63	36.05
KRH37816	Soybean	cytosol	33.76	35.89
KRH61724	Soybean	cytosol	31.96	34.16
KRH52396	Soybean	cytosol	4.25	32.04
KRH05202	Soybean	cytosol	13.66	30.46
KRG84467	Soybean	cytosol	5.03	30.0

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100786963	MapMan:20.2.4.5	Gene3D:3.10.20.90	EMBL:ACUP02010293	ncoils:Coil
EnsemblPlantsGene:GLYMA_17G009700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1MR20	InterPro:IPR000270
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRH02008	ProteinID:KRH02008	ProteinID:KRH02008.1
InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005	PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904
PANTHER:PTHR22904:SF437	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000233F1F9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:776121..779260

Molecular Weight (calculated)

85591.0 Da

IEP (calculated)

5.328

GRAVY (calculated)

-0.605

Length

776 amino acids

Sequence
(BLAST)

001: MGKSGGRRKK GGSNSNQGGA VDNSGSGAAA APTANGGVEV LDSSIFLKKA NELKEEGNKR FQNKDYAGAL EQYESALRLI PKTHPDRAVF HSNRAACLMQ
101: MKPIDYEAVI VECTMALQVQ PRFVRALLRR ARAFEAVGKY EMAVQDVQFL LAADPGNRDA LEIAQRLRTA LGPRQEAQQD LHSRPSPAAL GASAVRGAPI
201: AGLGPCLPAR PVGKKGANSV VGSVVLPNNN KPDKSQPVLP TENGPDTKSQ LPKLVLKPSN GSVKPPNRKK EDHKELSSTI HGQRLEVAVR WRPLKLVYDH
301: DIRLAQMPVN CHFRVLRDVV SKRFPSSSSV LIKYKDCDGD LVTITSTDEL RLAESSVDSH LMKEPGEDKS DSVAMLRLHI VEVSPEQEPP LLEEEEEKPV
401: ENEGVMGEES GSHSSLSESV SEVADTEVDK TAKDTPKEKP GTTGDTECKE VEMDDWLFEF AQLFRSHVGI DPDAHLDLHE LGMELCSEAL EETVTSEEAQ
501: DLFDKAASKF QEVAALAFFN WGNVHMCAAR KRIPLDESAG KEVVAEQLQV AYEWVKEKYS LAREKYEEAL SIKPDFYEGL LALGQQQFEM AKLHWSFALA
601: KKIDLSGWDS KETLQLFDSA EEKMKAATDM WEKLEEQRAK ELKDPNATKK EELLRRRKKQ GATEGESSSV GGQGEISAEE AAEQAAVMRS QIHLFWGNML
701: FERSQVECKL GMTGWKENLD AATERFKLAG ASEADVSMVL KNHCSNGDAK DGDDKKVENP QHNKTVKPEI NNANQV

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.