Factsheet for Bra019727.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69227	Canola	cytosol	51.35	90.85
VIT_00s1384g00010.t01	Wine grape	cytosol	5.88	83.33
VIT_00s0787g00010.t01	Wine grape	cytosol	13.75	82.39
AT1G62390.1	Thale cress	plastid	62.4	70.71
KRH02008	Soybean	nucleus	56.05	61.47
PGSC0003DMT400043113	Potato	cytosol	55.7	60.93
Solyc02g036360.1.1	Tomato	nucleus	54.29	60.71
Solyc02g081200.1.1	Tomato	nucleus	55.46	60.67
VIT_02s0012g02600.t01	Wine grape	cytosol	11.05	60.26
KRH51148	Soybean	cytosol	54.17	59.95
PGSC0003DMT400055266	Potato	cytosol	54.29	59.84
GSMUA_Achr1P18260_001	Banana	nucleus	47.24	56.94
VIT_00s1008g00010.t01	Wine grape	cytosol	15.16	55.13
VIT_17s0000g03920.t01	Wine grape	cytosol	12.69	54.0
TraesCS5D01G170500.1	Wheat	nucleus	49.24	53.72
TraesCS5A01G164700.1	Wheat	nucleus, plastid	49.0	53.26
TraesCS5B01G163300.1	Wheat	nucleus, plastid	49.12	53.25
EES00364	Sorghum	plastid	48.06	52.44
Zm00001d039966_P001	Maize	plastid	47.71	51.98
HORVU5Hr1G051200.1	Barley	mitochondrion	48.41	50.86
Os09t0135400-01	Rice	nucleus	46.65	50.51
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	29.73	35.04
Bra023964.1-P	Field mustard	nucleus	29.02	33.98
Bra007805.1-P	Field mustard	nucleus	29.14	32.85
Bra000549.1-P	Field mustard	nucleus	29.38	32.68
Bra006557.1-P	Field mustard	cytosol	24.32	31.13

Protein Annotations

Gene3D:1.10.225.10	Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	EnsemblPlantsGene:Bra019727	EnsemblPlants:Bra019727.1
EnsemblPlants:Bra019727.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:M4DT84	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF05184	PFscan:PS50005
PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF437	SMART:SM00028	SMART:SM00666
SUPFAM:SSF47862	SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:SapB_1	InterPro:Saposin-like	TMHMM:TMhelix
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000253ED7D	SEG:seg	:

Description

AT1G62390 (E=4e-268) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein

Coordinates

chrA06:+:4761895..4765696

Molecular Weight (calculated)

94169.7 Da

IEP (calculated)

5.590

GRAVY (calculated)

-0.486

Length

851 amino acids

Sequence
(BLAST)

001: MGKSGARKKK SKQANSSEIP SSSVNGGGDF DASVYLKRAH ELKEEGNKKF QAKDFQGALE QYADALKLVP KSHRDRAVFH SNRAACLMQM KPIDYDKVIS
101: ECSMALQVHP GFTRALLRRA RALEAVGKYE LAAQDVNLLL GADPNHKDAT EMSRRLMMCG PGGPQSRPSP AALGASAALG GPVNGLGPCL PSRQVHKKVA
201: SSSSSPVALP VVSSNSKVER PKMNPLVENG HEGKTQMAKI VLKPLNDSSS KGLMMKAEQS SSSQEKVTRW RPLKFVYDHD IRLGQMPVNC GFKVLREIVR
301: SRFPSSKSVL IKYKDNDGDL VTVTCTAELR LAESAADGVL TKEPESDKSD SVGMLRLHVV DVSPEQEPPL LDEEVEEEEV EEEKPPVEEE DIRASLSETV
401: SETEVSNEKS DKEKTPSSED PEMKELEMDD WLFDFAQLFR SHVGIDPDAH VDLHELGMEL CSEALEETVT SEEAQPLFEK AAAKFQEVAA LAFFNWGNVH
501: MCAARKRIPL EESGGKDKVA EQLQTAYEWV KERYTLAKEK YEHALSIKPD FYEGLLALGQ QQFEMAKLHW SFALAQKMDL SVWDATETLA LFDSAEEKMK
601: AATEMWEKLE EQRMNDLKNP NKKEEVSKRR KKQGDGENGE ASEAVTAAEA AEQAIAMRSQ IHLFWGNMLF ERSQVECKIS VSGWEKNLDS AVERFKLAGA
701: SETDISTVVK NHCSNEAAAE GDDKKTQPKK ICSQIGLCTF DVCGIESVMD KENAKSSNGV GDAACSACEM AVVWIQSQLR QNMTHQQASI TAPLILSVAT
801: ILVLILFICY RCWLSWTAMQ ASSHPNGRVC SGLCSTLDHP HGFAHHWRQT L

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.