Factsheet for VIT_02s0012g02600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 4
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0787g00010.t01	Wine grape	cytosol	53.21	58.45
VIT_00s1008g00010.t01	Wine grape	cytosol	50.64	33.76
VIT_17s0000g03920.t01	Wine grape	cytosol	39.74	31.0
VIT_00s1384g00010.t01	Wine grape	cytosol	6.41	16.67
KRH02008	Soybean	nucleus	67.31	13.53
KRH51148	Soybean	cytosol	66.03	13.39
GSMUA_Achr1P18260_001	Banana	nucleus	60.26	13.31
Solyc02g036360.1.1	Tomato	nucleus	62.82	12.88
PGSC0003DMT400043113	Potato	cytosol	63.46	12.72
Solyc02g081200.1.1	Tomato	nucleus	63.46	12.72
PGSC0003DMT400055266	Potato	cytosol	62.82	12.69
AT1G62390.1	Thale cress	plastid	60.26	12.52
EES00364	Sorghum	plastid	59.62	11.92
Zm00001d039966_P001	Maize	plastid	58.97	11.78
Os09t0135400-01	Rice	nucleus	57.69	11.45
TraesCS5D01G170500.1	Wheat	nucleus	57.05	11.41
TraesCS5A01G164700.1	Wheat	nucleus, plastid	57.05	11.37
TraesCS5B01G163300.1	Wheat	nucleus, plastid	57.05	11.34
CDY30038	Canola	cytosol, plastid	58.97	11.14
Bra019727.1-P	Field mustard	cytosol	60.26	11.05
HORVU5Hr1G051200.1	Barley	mitochondrion	56.41	10.86
VIT_11s0118g00490.t01	Wine grape	cytosol	46.15	10.62
VIT_04s0008g06310.t01	Wine grape	mitochondrion	44.23	9.19
CDY69227	Canola	cytosol	27.56	8.94

Protein Annotations

ArrayExpress:VIT_02s0012g02600	EMBL:FN596247	EnsemblPlants:VIT_02s0012g02600.t01	EnsemblPlantsGene:VIT_02s0012g02600	PANTHER:PTHR22904	PANTHER:PTHR22904:SF437
ProteinID:CCB57831	ProteinID:CCB57831.1	UniParc:UPI00021096C5	UniProt:F6HT21	MapMan:20.2.4.5	:

Description

No Description!

Coordinates

chr2:-:10225140..10225656

Molecular Weight (calculated)

17466.9 Da

IEP (calculated)

5.029

GRAVY (calculated)

-0.179

Length

156 amino acids

Sequence
(BLAST)

001: MGVASEDNDD YGTPPFNSEQ LVSLHGKTTL IAAITRVLAE EGKAKVVALD EIDKAAPKFQ EVVALAFFNW GNVHMYAARK RIPLDESAAK DVMATQIQVA
101: YDWVREKYSL AREKYEEALL IKPDFYEGLL ALGQQQFEMA KLHWSFALAK KLDLSG

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.