CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039966_P001	Maize	plastid	79.36	79.26
VIT_00s0787g00010.t01	Wine grape	cytosol	14.1	77.46
VIT_00s1384g00010.t01	Wine grape	cytosol	5.77	75.0
TraesCS5D01G170500.1	Wheat	nucleus	71.03	71.03
TraesCS5A01G164700.1	Wheat	nucleus, plastid	71.03	70.75
TraesCS5B01G163300.1	Wheat	nucleus, plastid	70.26	69.81
Os09t0135400-01	Rice	nucleus	69.87	69.34
HORVU5Hr1G051200.1	Barley	mitochondrion	70.13	67.53
GSMUA_Achr1P18260_001	Banana	nucleus	54.74	60.48
VIT_02s0012g02600.t01	Wine grape	cytosol	11.92	59.62
VIT_00s1008g00010.t01	Wine grape	cytosol	16.41	54.7
KRH51148	Soybean	cytosol	53.59	54.36
KRH02008	Soybean	nucleus	53.97	54.25
AT1G62390.1	Thale cress	plastid	50.64	52.6
CDY69227	Canola	cytosol	32.05	51.98
Solyc02g081200.1.1	Tomato	nucleus	51.15	51.29
Solyc02g036360.1.1	Tomato	nucleus	50.0	51.25
PGSC0003DMT400043113	Potato	cytosol	50.77	50.9
PGSC0003DMT400055266	Potato	cytosol	50.0	50.52
VIT_17s0000g03920.t01	Wine grape	cytosol	12.95	50.5
CDY30038	Canola	cytosol, plastid	52.18	49.27
Bra019727.1-P	Field mustard	cytosol	52.44	48.06
EER97166	Sorghum	cytosol	32.05	36.13
EES13437	Sorghum	cytosol	29.62	31.09
EER96429	Sorghum	plastid	30.77	25.83

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	EntrezGene:8061355	UniProt:C5XQT5	EnsemblPlants:EES00364
ProteinID:EES00364	ProteinID:EES00364.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR000270	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005	PFscan:PS50293
PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF437	SMART:SM00028	SMART:SM00666	EnsemblPlantsGene:SORBI_3003G083400
SUPFAM:SSF48452	SUPFAM:SSF54277	unigene:Sbi.12318	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0001A847F3	RefSeq:XP_002455244.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:7161171..7171894

Molecular Weight (calculated)

85604.4 Da

IEP (calculated)

5.494

GRAVY (calculated)

-0.434

Length

780 amino acids

Sequence
(BLAST)

001: MGKSGAKKKK PAAAAAAAAK PPPASAEQKA TPPPSSSLPA ANGGASPHQA VDAGVLLRRA HELKEEGNRL FQSRDYAGAL RQYELALRLA PRGHPDRAVF
101: HSNRAACLLQ LRPVDHEAVA QECSLALQAE PRFPRALLRR ARALEALGRH ELALADALAL LALDPDHRDA IDLSYRLRSR VNASSAASAS SAPEPTSRPS
201: PAALGASAVV AGLGHSLPAR PFPKKQPPPP PPATLQPNLA VMSKSNPSPL PKLVPFSNSP PSSAKPLAAD SSEKAMTLPV ASLLPATVEP LINKKVVTRW
301: RPLKLVYDHD IRLGQVPEKC SFRTLREFVA KRFPSSKAVL IKYKDADGDL VTITSTEELR LAESFIDKVG HEVVENGREG DNKLPVLRLH LVEVSPEQEP
401: TLPSEEEKLE EDEELLINGE YSTLNTSAVV TNAEVMKQDV ENGVAEQSME TGKKDCGHAE CKEAEIDDWL LQFAELFRNQ VGIDADAHLD LHELGMELCS
501: EALEETVTSE EAQALFEMAA SKFQEVAALA LFNWGNVHMC EARKRIPLDE SAPKEVMAAQ LRTAYHWVKE RYALAGHKYE EALKIKPDFY EGLLALGQQH
601: FETAKLHWSF ALADKADLST WDSLETFKLF DSAEHNMRAA TEMWEKVEEQ RMAELKEPGA GEKDEVLRKR HAGGQPELTP EEAAEQAAVM RQQIHLFWGN
701: MLFERSQVEF KLSVGDWKTN LDASVERFKL AGASESDIST VLKNHFSNAA SECEEKKVMT SGTEISQTND NVEDKCVVET

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.