CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	EES09373	AT4G09570.1	19130088
AT4G32070.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019666_P001	Maize	plastid	63.4	63.54
KRG84467	Soybean	cytosol	8.4	60.0
KRH05201	Soybean	cytosol	18.08	55.81
GSMUA_Achr7P05370_001	Banana	cytosol	38.32	54.6
GSMUA_Achr4P20360_001	Banana	cytosol	38.43	53.28
GSMUA_Achr3P00890_001	Banana	cytosol	37.78	52.23
EER97166	Sorghum	cytosol	38.54	51.73
TraesCS5B01G160600.1	Wheat	cytosol	51.99	51.66
TraesCS5A01G163200.1	Wheat	cytosol	51.99	51.66
TraesCS5D01G168200.1	Wheat	cytosol	51.88	51.55
HORVU5Hr1G050890.1	Barley	cytosol	50.81	50.32
VIT_11s0118g00490.t01	Wine grape	cytosol	36.06	49.41
Solyc08g029190.2.1	Tomato	nucleus	34.98	48.58
EES13437	Sorghum	cytosol	38.75	48.45
GSMUA_Achr4P04120_001	Banana	cytosol	26.7	48.44
GSMUA_Achr9P22500_001	Banana	cytosol	35.84	48.33
PGSC0003DMT400038437	Potato	cytosol	34.66	48.2
PGSC0003DMT400049152	Potato	cytosol	34.66	48.2
Solyc06g065910.2.1	Tomato	cytosol	35.52	48.18
PGSC0003DMT400067142	Potato	cytosol	35.09	47.59
CDX68815	Canola	cytosol, nucleus, plastid	34.88	47.44
CDY58928	Canola	cytosol	35.09	46.64
CDY11535	Canola	nucleus	35.31	46.46
CDY38510	Canola	nucleus	34.45	45.98
VIT_04s0008g06310.t01	Wine grape	mitochondrion	36.92	45.67
AT2G25290.4	Thale cress	cytosol	36.28	45.23
CDX83226	Canola	cytosol	34.88	45.0
CDX75218	Canola	cytosol	35.09	44.97
Bra007805.1-P	Field mustard	nucleus	36.49	44.9
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	34.77	44.74
CDX72344	Canola	nucleus	33.69	44.59
KRH61724	Soybean	cytosol	34.66	44.35
Solyc07g007390.2.1	Tomato	nucleus	36.6	43.7
KRH37816	Soybean	cytosol	34.34	43.7
KRH52396	Soybean	cytosol	4.84	43.69
CDY13473	Canola	nucleus	33.91	43.57
KRH20222	Soybean	nucleus	33.8	43.37
Bra023964.1-P	Field mustard	nucleus	33.91	43.33
Bra000549.1-P	Field mustard	nucleus	35.31	42.88
KRH03587	Soybean	nucleus	33.26	42.62
AT4G32070.1	Thale cress	nucleus	35.2	41.82
PGSC0003DMT400078952	Potato	cytosol	36.49	41.8
CDX70924	Canola	cytosol	25.73	37.52
CDY51850	Canola	cytosol	24.87	36.32
Bra006557.1-P	Field mustard	cytosol	25.19	35.19
KRH05202	Soybean	cytosol	12.81	34.2
AT5G20360.1	Thale cress	cytosol	26.91	30.9
EES00364	Sorghum	plastid	25.83	30.77

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	EntrezGene:8063424	UniProt:C5X7E0	ncoils:Coil
EnsemblPlants:EER96429	ProteinID:EER96429	ProteinID:EER96429.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564
PFscan:PS50005	PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00028
SMART:SM00666	EnsemblPlantsGene:SORBI_3002G145400	SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0001A836FF	RefSeq:XP_002459908.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:27802318..27807896

Molecular Weight (calculated)

106176.0 Da

IEP (calculated)

5.996

GRAVY (calculated)

-0.825

Length

929 amino acids

Sequence
(BLAST)

001: MGKTPKKKKL SESGSRQSLG GGSPRTSRCN SRSSQCSGGE QTSPNHPASA ALAVDDDDAV FIGLASELKE EGTKLFQTRD YEGAAFKFDK AIKLLPQGHN
101: DMAFLHCNIA ACYMHMNPEE YHRAIDECNS ALEASPTYTK ALLKRARCFE ALDRLDLACK DVEKVLSLEP NNVTASELYE SIKEVMEMEE QVSSLEKQRQ
201: VDEPTAINIA KERIQRRVSR KFRNSIVEEE VWEMMIHENN EEQEEDDHGN NNNNNEDGEK HRSSKEDAIS ELQEKRSSSL QDKQQHREER ETKTFRSTAE
301: CNMHSLGGVR NTNKEAGGGG RRHAQAQDSH EKHLEEILVK GIQPSEMQGK HTTTQNQAAS SVERRNKKNF EVGSHSKQEK QQQYERYTNA NANVSLQGKH
401: SLVEEKYEMR YMLPEKQITT IKAGNNYYAR EKHPKYYASR ENQNHEAATA SREVVKKKFK FVHGDDIRIV LIPESCSLLH VMDIARYKYN PHLKSFLLKF
501: MDKEGDLVTI TSTEDLRWVE DLYPQVPVRL HIKEVSPERE ITRDLVMPMS SSLAAEHREQ PSHYYSSTSD DYECGSSKKD ADERNTHPPC CTTDDWMMQF
601: ARLFKNHAGF DSDACVDLRD LGIRLYYEAM EDTITSEEAQ EIFQAAEAKF QEMAALALFN WGNVHMSRAR KRLILSEDTS KESILAQVKS AYEWACTEYV
701: KAGKKFEDSV DVKPDFYEGL IALGQQQFEQ AKLSWRYADT CKVDMGTEVL ELFNHAEDNM EKGMEMWEGI EYLRVKGLSK SRKGKIVVTD KLGLNEQGKD
801: NLSPDEAFEQ ASNMRSQLNI SWGTILYERS VVEFKLGLSS WEESLQEAIE KFKTGGASVA DISVMVKNHC VNGNNQEGLS FNIDEIVQAW NEMYDAKKLK
901: NGSSSFRLEP IFRRRPSKLH NILEHIHYT

Best Arabidopsis Sequence Match ( AT4G32070.1 )
(BLAST)

001: MGKPTAKKKN PETPKDASGG GGGGGGKSGK TYHRSTSRVF DEDMEIFISR ALELKEEGNK LFQKRDHEGA MLSFDKALKL LPKDHIDVAY LRTSMASCYM
101: QMGLGEYPNA ISECNLALEA SPRYSKALVR RSRCYEALNK LDYAFRDARI VLNMEPGNVS ANEIFDRVKK VLVDKGIDVD EMEKDFVDVQ PVCAARLKKI
201: VKERLRKSKK KKKSGGKDEE LKSPKVVVVD KGDEAEGRNK PKEEKSDKSD IDGKIGGKRE EKKTSFKSDK GQKKKSGGNK AGEERKVEDK VVVMDKEVIA
301: SEIVDGGGSK KEGATVTRTI KLVHGDDIRW AQLPLDSTVR LVRDVIRDRF PALRGFLIKY RDTEGDLVTI TTTDELRLAA STHDKLGSLR LYIAEVNPDQ
401: EPTYDGMSNT ESTDKVSKRL SSLADNGSVG EYVGSDKASG CFENWIFQFA QLFKNHVGFD SDSYVDLHDL GMKLYTEAME DAVTGEDAQE LFQIAADKFQ
501: EMGALALLNW GNVHMSKARK QVCIPEDASR EAIIEAVEAA FVWTQNEYNK AAEKYEEAIK VKPDFYEALL ALGQEQFEHA KLCWYHALKS KVDLESEASQ
601: EVLKLYNKAE DSMERGMQIW EEMEECRLNG ISKLDKHKNM LRKLELDELF SEASEEETVE QTANMSSQIN LLWGSLLYER SIVEYKLGLP TWDECLEVAV
701: EKFELAGASA TDIAVMVKNH CSSESALEGM GFKIDEIVQA WNEMYDAKRW QMGVPSFRLE PMFRRRAPKL HDILENVFSG PV

Arabidopsis Description

Phox4Protein PHOX4 [Source:UniProtKB/Swiss-Prot;Acc:F4JTI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.