CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83226	Canola	cytosol	90.95	87.92
Bra000549.1-P	Field mustard	nucleus	87.93	80.0
CDY58928	Canola	cytosol	78.88	78.54
CDY11535	Canola	nucleus	79.31	78.19
KRG84467	Soybean	cytosol	13.79	73.85
AT2G25290.4	Thale cress	cytosol	77.87	72.75
CDX68815	Canola	cytosol, nucleus, plastid	68.68	69.99
CDX72344	Canola	nucleus	66.67	66.1
CDX75218	Canola	cytosol	67.82	65.1
CDY13473	Canola	nucleus	67.53	65.01
KRH05201	Soybean	cytosol	27.73	64.12
Solyc08g029190.2.1	Tomato	nucleus	54.6	56.8
PGSC0003DMT400038437	Potato	cytosol	54.02	56.29
PGSC0003DMT400049152	Potato	cytosol	54.02	56.29
Solyc06g065910.2.1	Tomato	cytosol	54.45	55.33
PGSC0003DMT400067142	Potato	cytosol	54.31	55.18
KRH61724	Soybean	cytosol	56.75	54.41
VIT_04s0008g06310.t01	Wine grape	mitochondrion	58.62	54.33
GSMUA_Achr4P20360_001	Banana	cytosol	50.29	52.24
GSMUA_Achr7P05370_001	Banana	cytosol	48.71	51.99
GSMUA_Achr3P00890_001	Banana	cytosol	49.57	51.34
Os09t0556200-00	Rice	cytosol, plasma membrane	50.0	50.73
Zm00001d021400_P001	Maize	cytosol	49.86	50.51
EER97166	Sorghum	cytosol	50.0	50.29
GSMUA_Achr4P04120_001	Banana	cytosol	36.21	49.22
TraesCS5D01G366100.1	Wheat	cytosol	48.13	48.2
TraesCS5A01G357000.1	Wheat	cytosol	47.7	47.77
TraesCS5B01G359500.1	Wheat	cytosol	47.7	47.63
HORVU5Hr1G088290.2	Barley	cytosol	47.56	47.49
GSMUA_Achr9P22500_001	Banana	cytosol	46.98	47.46
KRH52396	Soybean	cytosol	6.9	46.6
Zm00001d024424_P001	Maize	cytosol	45.55	42.78
KRH05202	Soybean	cytosol	21.26	42.53
Os08t0296900-01	Rice	cytosol	47.27	42.51
EES13437	Sorghum	cytosol	44.68	41.86
Zm00001d037923_P001	Maize	cytosol	9.2	39.51
CDX70924	Canola	cytosol	35.49	38.78
CDY51850	Canola	cytosol	34.48	37.74
EER96429	Sorghum	plastid	45.98	34.45
Zm00001d019666_P001	Maize	plastid	45.4	34.09
TraesCS5D01G168200.1	Wheat	cytosol	44.97	33.48
TraesCS5A01G163200.1	Wheat	cytosol	44.68	33.26
TraesCS5B01G160600.1	Wheat	cytosol	44.68	33.26
HORVU5Hr1G050890.1	Barley	cytosol	44.25	32.84
CDY69227	Canola	cytosol	21.84	31.6
CDY30038	Canola	cytosol, plastid	36.06	30.39
HORVU5Hr1G050130.1	Barley	cytosol	13.51	23.68
TraesCS5D01G165100.1	Wheat	cytosol	13.07	23.64
TraesCS5B01G157700.1	Wheat	cytosol	13.65	22.41
TraesCS5A01G160000.1	Wheat	cytosol	11.93	20.96

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	UniProt:A0A078HJ71	EnsemblPlants:CDY38510	ProteinID:CDY38510
ProteinID:CDY38510.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00066143001
InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564
PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00028	SMART:SM00666
SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EEF728
SEG:seg	:	:	:	:	:

Description

BnaC03g26870DBnaC03g26870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJ71]

Coordinates

chrLK032425:+:51246..53565

Molecular Weight (calculated)

78785.1 Da

IEP (calculated)

4.905

GRAVY (calculated)

-0.623

Length

696 amino acids

Sequence
(BLAST)

001: MGKPTGKKKN PDTPPTDSSG RGGGGGNKSG KSFDRSASKA DEDMTIFINR ATELKEEGNK LFQRRDTEGA MLRYDKAVKL LPRDHGDVAY LRTSMASCYM
101: QMGLGEYPNA INECNLALEA SPKHSKALLK RARCYEALNK MDFAFRDSRL VLNMEPENVS ANEIFERVNK VLVAKGIDLV ELEKSFLPEE KKKKTVNAEK
201: DVEDGDSRRK KLEEEKKASP VMDKEVIASE IDPMVTRTVK LVHGDDIRWA QLPLDSSVRL VRDVIKDRYP SLKGFLIKYR DKEGDLVTIT MTDELRLAAS
301: TREKLGSFRL YVTEVSPNQE PTYEGGMNNE ESTDKFAKGS SSVGDCVESE KASAGLDHWI FQFAQLFKNH VGFDSDSYLD LHNLGMKLYT EGMEDTVTGE
401: DAQELFDIAA DKFQEMAALA LFNWGNIHMS KARRQIYFPE DGSRETLLEK VEAGFEWATK EYNKAAEKYE EAVKVKSDFY EAHLALGQQQ FEQAKLCWYH
501: ALSNKIDVDS EASQDVLKLY NKAEESMEKG MQIWEEMEER RLNGISNFDQ HKAMLQKLGL DGEFSEASGE GNAEQTANMS SQINLLWGSL LYERSIVEYK
601: LGLPTWDECM EVAVEKFELA GASATDIAVM VKNHCSNENA LEGMGFKIDE IVQAWNEMYD AKRWQIGVPS FRLEPLFRRR SPKLHDILEN VFSGPQ

Best Arabidopsis Sequence Match ( AT2G25290.2 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.