CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	CDX90725	AT4G09570.1	19130088
AT4G32070.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75218	Canola	cytosol	91.07	85.79
CDX72344	Canola	nucleus	75.26	73.22
KRG84467	Soybean	cytosol	13.76	72.31
CDY13473	Canola	nucleus	76.13	71.92
CDY11535	Canola	nucleus	72.18	69.83
CDY58928	Canola	cytosol	71.3	69.67
CDY38510	Canola	nucleus	69.99	68.68
AT4G32070.1	Thale cress	nucleus	77.6	67.77
CDX83226	Canola	cytosol	68.52	65.0
KRH05201	Soybean	cytosol	28.26	64.12
Solyc08g029190.2.1	Tomato	nucleus	56.95	58.15
PGSC0003DMT400049152	Potato	cytosol	56.22	57.48
PGSC0003DMT400038437	Potato	cytosol	56.22	57.48
Solyc06g065910.2.1	Tomato	cytosol	56.37	56.2
PGSC0003DMT400067142	Potato	cytosol	56.22	56.06
VIT_04s0008g06310.t01	Wine grape	mitochondrion	60.91	55.39
KRH61724	Soybean	cytosol	56.95	53.58
Os09t0556200-00	Rice	cytosol, plasma membrane	52.27	52.04
GSMUA_Achr4P20360_001	Banana	cytosol	50.95	51.94
GSMUA_Achr7P05370_001	Banana	cytosol	49.05	51.38
GSMUA_Achr3P00890_001	Banana	cytosol	50.22	51.04
GSMUA_Achr4P04120_001	Banana	cytosol	37.92	50.59
KRH52396	Soybean	cytosol	7.61	50.49
Zm00001d021400_P001	Maize	cytosol	50.66	50.36
EER97166	Sorghum	cytosol	50.66	50.0
TraesCS5D01G366100.1	Wheat	cytosol	49.19	48.35
TraesCS5A01G357000.1	Wheat	cytosol	49.19	48.35
TraesCS5B01G359500.1	Wheat	cytosol	48.61	47.63
HORVU5Hr1G088290.2	Barley	cytosol	48.46	47.49
GSMUA_Achr9P22500_001	Banana	cytosol	46.85	46.44
Os08t0296900-01	Rice	cytosol	50.07	44.19
Zm00001d024424_P001	Maize	cytosol	47.58	43.86
EES13437	Sorghum	cytosol	47.14	43.34
KRH05202	Soybean	cytosol	21.82	42.82
Zm00001d037923_P001	Maize	cytosol	9.08	38.27
CDX70924	Canola	cytosol	34.55	37.05
CDY51850	Canola	cytosol	34.26	36.79
EER96429	Sorghum	plastid	47.44	34.88
Zm00001d019666_P001	Maize	plastid	46.71	34.41
TraesCS5D01G168200.1	Wheat	cytosol	45.53	33.26
TraesCS5A01G163200.1	Wheat	cytosol	45.39	33.16
TraesCS5B01G160600.1	Wheat	cytosol	45.39	33.16
HORVU5Hr1G050890.1	Barley	cytosol	44.66	32.52
CDY69227	Canola	cytosol	22.25	31.6
CDY30038	Canola	cytosol, plastid	36.16	29.9
TraesCS5D01G165100.1	Wheat	cytosol	13.47	23.9
HORVU5Hr1G050130.1	Barley	cytosol	13.62	23.43
TraesCS5B01G157700.1	Wheat	cytosol	13.76	22.17
TraesCS5A01G160000.1	Wheat	cytosol	12.59	21.72

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	EnsemblPlants:CDX68815	ProteinID:CDX68815	ProteinID:CDX68815.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00130534001	InterPro:IPR000270	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50293	PFscan:PS51745
PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EEB99B	SEG:seg	:

Description

BnaC01g06380D

Coordinates

chrLK031789:-:1414051..1416960

Molecular Weight (calculated)

77181.7 Da

IEP (calculated)

5.086

GRAVY (calculated)

-0.495

Length

683 amino acids

Sequence
(BLAST)

001: MGKPTAKKTP KDASGGGGGK SGGKANHRSA SRAFDEDMEI FINRAAELKE EGNKLFQKRD NEGAMLCYDK AVKLLPKDHI DVAYLRTSMA SCYMQMGLGE
101: YPNAISECNS ALEASPRYSR ALLRRARCYE ALNKLDYAFR DARIVLNMEP ENVNANEVFD RVKKALVDKA IVESPKAIIA ETKEEKKKTT FKKQKKKSGN
201: KAGDDKVVVM DKEVIASEIV QGGKEETTVT RTVKLVHGDD IRWAQLPLDS SIRLVRDVTK DRFPSLKGFL IKYKDTEGDL VTITTSNELK LAASNHDKLA
301: SLRLYIAEAS PDQEPTYDGT EKEDVKRVSS VADSGSVGES SCFENWIFQF AQLFKNHVGF DSDSYLDLHD LGMKLYTEAM EDAVTGEEAQ VLFEIAADKF
401: QEMAALAMFN WGNVHMSKAR KQVSFPEDAS REAVLEAVEA AFVWTRNEYN KAAKRYEEAV KIKPDFYEAL IALGQEQFEQ AKLLWYHALK GKVDIESEVS
501: QEVLMLYNKA EDSMERGMQI WEEMEERRLN GISKLDMQRA LLHKMQLDGW CREGADEETV EQTANMSSQI NLLWGSILYE RSIVEYKLGL TTWEECLEVA
601: VEKFELAGAS ATDIAVMVKN HCSSESALEG MGFKIDEIVQ AWNEMYDAKR WQMGVPSFRL EPMFRRRAPK LHDILENVFS ESA

Best Arabidopsis Sequence Match ( AT2G25290.2 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.